Variant report

Variant	rs4559813
Chromosome Location	chr13:59940695-59940696
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10219957	0.84[ASN][1000 genomes]
rs10220171	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12430140	0.83[EUR][1000 genomes]
rs12584255	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1326088	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1326089	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1326090	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1326091	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1409254	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1853920	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1932745	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs34037070	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35012407	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4262849	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4580053	0.90[EUR][1000 genomes]
rs4884334	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4886159	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7318040	0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9317070	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9317071	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9538394	0.81[ASN][1000 genomes]
rs9597996	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9597997	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9597998	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9598003	0.88[EUR][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:59931200-59942800	Weak transcription	Gastric	stomach
2	chr13:59932600-59942000	Weak transcription	Right Atrium	heart
3	chr13:59932600-59945400	Weak transcription	Pancreas	Pancrea
4	chr13:59934600-59942600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr13:59938400-59942600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr13:59938400-59947000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr13:59939000-59942000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr13:59939000-59942800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr13:59939200-59941600	Weak transcription	Fetal Stomach	stomach
10	chr13:59939200-59942000	Weak transcription	Right Ventricle	heart
11	chr13:59939200-59946800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr13:59939200-59948600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr13:59939200-59950600	Weak transcription	Lung	lung
14	chr13:59939400-59941600	Weak transcription	Fetal Heart	heart
15	chr13:59939400-59942000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr13:59939400-59942000	Weak transcription	Left Ventricle	heart
17	chr13:59939400-59942600	Weak transcription	Colon Smooth Muscle	Colon
18	chr13:59939400-59942800	Weak transcription	Stomach Smooth Muscle	stomach
19	chr13:59939400-59947000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr13:59940000-59942400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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