Variant report

Variant	rs1932745
Chromosome Location	chr13:59933500-59933501
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10219927	0.82[ASN][1000 genomes]
rs10220135	0.81[ASN][1000 genomes]
rs10220171	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10454642	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11148465	0.83[EUR][1000 genomes]
rs12428489	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12584255	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1326088	0.96[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1326089	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1326090	0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1326091	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1853920	0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs34037070	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35012407	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4262849	0.91[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4559813	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4884334	0.91[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4886159	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs5000933	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7318040	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9317070	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9317071	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9538394	0.82[ASN][1000 genomes]
rs9597997	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9597998	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9597999	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9805343	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832621	chr13:59784624-59938693	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:59924800-59938600	Weak transcription	Right Ventricle	heart
2	chr13:59927600-59938200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr13:59927600-59938600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr13:59930800-59934600	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr13:59931200-59933800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr13:59931200-59937600	Weak transcription	Fetal Heart	heart
7	chr13:59931200-59942800	Weak transcription	Gastric	stomach
8	chr13:59931400-59934000	Weak transcription	HUVEC	blood vessel
9	chr13:59931800-59933800	Enhancers	Adipose Nuclei	Adipose
10	chr13:59932200-59933600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr13:59932200-59933800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr13:59932600-59933800	Weak transcription	Left Ventricle	heart
13	chr13:59932600-59934400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr13:59932600-59934400	Weak transcription	Psoas Muscle	Psoas
15	chr13:59932600-59939000	Weak transcription	Lung	lung
16	chr13:59932600-59942000	Weak transcription	Right Atrium	heart
17	chr13:59932600-59945400	Weak transcription	Pancreas	Pancrea
18	chr13:59932800-59934600	Enhancers	Fetal Stomach	stomach
19	chr13:59933200-59934400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr13:59933200-59935000	Enhancers	Fetal Muscle Leg	muscle
21	chr13:59933200-59935200	Enhancers	Colon Smooth Muscle	Colon
22	chr13:59933400-59934400	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr13:59933400-59934800	Enhancers	Stomach Smooth Muscle	stomach
24	chr13:59933400-59937200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr13:59933400-59937400	Weak transcription	Small Intestine	intestine

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