Variant report

Variant	rs9597998
Chromosome Location	chr13:59935954-59935955
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10219927	0.81[ASN][1000 genomes]
rs10219957	0.84[ASN][1000 genomes]
rs10220171	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10454642	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12428489	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12584255	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1326088	0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1326089	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1326090	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1326091	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1409254	0.82[ASN][1000 genomes]
rs1853920	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1932745	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34037070	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35012407	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4262849	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4559813	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4884334	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4886159	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7318040	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9317070	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9317071	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9538394	0.81[ASN][1000 genomes]
rs9597996	0.83[ASN][1000 genomes]
rs9597997	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9597999	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9805343	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832621	chr13:59784624-59938693	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:59924800-59938600	Weak transcription	Right Ventricle	heart
2	chr13:59927600-59938200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr13:59927600-59938600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr13:59931200-59937600	Weak transcription	Fetal Heart	heart
5	chr13:59931200-59942800	Weak transcription	Gastric	stomach
6	chr13:59932600-59939000	Weak transcription	Lung	lung
7	chr13:59932600-59942000	Weak transcription	Right Atrium	heart
8	chr13:59932600-59945400	Weak transcription	Pancreas	Pancrea
9	chr13:59933400-59937200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr13:59933400-59937400	Weak transcription	Small Intestine	intestine
11	chr13:59934400-59937200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr13:59934600-59937200	Weak transcription	Fetal Stomach	stomach
13	chr13:59934600-59939000	Weak transcription	Left Ventricle	heart
14	chr13:59934600-59942600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr13:59934800-59937400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr13:59935000-59937400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr13:59935200-59937400	Weak transcription	Colon Smooth Muscle	Colon

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