Variant report

Variant	rs10220786
Chromosome Location	chr15:50292337-50292338
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11070742	0.90[CHB][hapmap]
rs12101586	0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs12442429	0.91[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12899434	0.96[CEU][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes]
rs16963149	0.81[CHB][hapmap];0.87[CHD][hapmap];0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs16963151	0.81[CHB][hapmap];0.90[CHD][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs2414003	0.93[LWK][hapmap];0.96[YRI][hapmap]
rs4430689	0.97[ASN][1000 genomes]
rs4522364	0.82[YRI][hapmap]
rs7164710	0.85[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs7166047	0.91[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.91[LWK][hapmap];0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs72623974	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8027127	0.88[ASN][1000 genomes]
rs8027524	0.81[CHB][hapmap];0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs8027678	0.81[CHB][hapmap];0.87[CHD][hapmap];0.88[ASN][1000 genomes]
rs8028370	0.86[CHB][hapmap]
rs8029355	0.89[YRI][hapmap]
rs8041864	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.98[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv904207	chr15:50290295-50352945	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50278000-50301600	Weak transcription	Liver	Liver
2	chr15:50282000-50295600	Weak transcription	Adipose Nuclei	Adipose
3	chr15:50287400-50294400	Weak transcription	Fetal Stomach	stomach
4	chr15:50287600-50296000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr15:50288400-50294000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr15:50288600-50293600	Weak transcription	Colon Smooth Muscle	Colon
7	chr15:50291600-50294600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr15:50291600-50294600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr15:50291800-50292800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr15:50291800-50293600	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr15:50291800-50293800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr15:50291800-50294800	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr15:50291800-50296200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr15:50292000-50292600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
15	chr15:50292000-50292600	Strong transcription	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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