Variant report

Variant	rs8027127
Chromosome Location	chr15:50277418-50277419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10220786	0.88[ASN][1000 genomes]
rs1080476	0.80[ASN][1000 genomes]
rs12101586	1.00[ASN][1000 genomes]
rs12442429	0.89[ASN][1000 genomes]
rs16963149	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963151	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4430689	0.88[ASN][1000 genomes]
rs7164710	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7166047	0.89[ASN][1000 genomes]
rs72623974	0.88[ASN][1000 genomes]
rs8027524	1.00[ASN][1000 genomes]
rs8027678	1.00[ASN][1000 genomes]
rs8041864	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv904205	chr15:50228476-50286981	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50262800-50278200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr15:50265800-50277800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr15:50267600-50277800	Weak transcription	Spleen	Spleen
4	chr15:50268600-50277600	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr15:50268600-50281000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr15:50268600-50290400	Strong transcription	Primary hematopoietic stem cells	blood
7	chr15:50273200-50280000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr15:50274400-50277800	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr15:50274800-50279400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr15:50275000-50281000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr15:50275200-50277800	Weak transcription	Right Atrium	heart
12	chr15:50275400-50283200	Weak transcription	NHLF	lung
13	chr15:50275600-50277800	Weak transcription	Placenta	Placenta
14	chr15:50275600-50278400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr15:50276800-50277600	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr15:50276800-50281200	Weak transcription	Left Ventricle	heart
17	chr15:50277200-50279400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr15:50277400-50279600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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