Variant report

Variant	rs7164710
Chromosome Location	chr15:50282623-50282624
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10220786	0.85[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs12101586	0.90[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs12442429	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12899434	0.80[JPT][hapmap]
rs12914620	0.85[CHB][hapmap]
rs16963149	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[CHD][hapmap];0.83[GIH][hapmap];0.89[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16963151	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4430689	0.95[ASN][1000 genomes]
rs7166047	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.98[ASN][1000 genomes]
rs72623974	0.95[ASN][1000 genomes]
rs8027127	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8027524	0.86[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs8027678	0.86[CHB][hapmap];0.92[CHD][hapmap];0.91[ASN][1000 genomes]
rs8028370	0.81[CHB][hapmap]
rs8029355	0.87[GIH][hapmap]
rs8041864	0.85[CHB][hapmap];0.83[CHD][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv904205	chr15:50228476-50286981	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50268600-50290400	Strong transcription	Primary hematopoietic stem cells	blood
2	chr15:50275400-50283200	Weak transcription	NHLF	lung
3	chr15:50278000-50301600	Weak transcription	Liver	Liver
4	chr15:50278400-50283800	Enhancers	Rectal Smooth Muscle	rectum
5	chr15:50278400-50285000	Enhancers	Colon Smooth Muscle	Colon
6	chr15:50279800-50283400	Enhancers	Stomach Smooth Muscle	stomach
7	chr15:50280400-50288000	Weak transcription	Fetal Muscle Leg	muscle
8	chr15:50280600-50283400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr15:50281200-50283600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr15:50281200-50290200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr15:50281600-50282800	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr15:50282000-50283000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr15:50282000-50285400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:50282000-50285400	Weak transcription	Left Ventricle	heart
15	chr15:50282000-50286400	Weak transcription	Aorta	Aorta
16	chr15:50282000-50287000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr15:50282000-50295600	Weak transcription	Adipose Nuclei	Adipose
18	chr15:50282200-50282800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr15:50282200-50290400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr15:50282400-50283000	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr15:50282400-50285400	Weak transcription	Ovary	ovary
22	chr15:50282600-50283200	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr15:50282600-50284600	Enhancers	Fetal Stomach	stomach
24	chr15:50282600-50289600	Strong transcription	Primary neutrophils fromperipheralblood	blood

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