Variant report

Variant	rs8027524
Chromosome Location	chr15:50277619-50277620
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:50275595..50278547-chr15:50278669..50281707,3	K562	blood:
2	chr15:50269706..50272212-chr15:50276259..50278710,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10220786	0.81[CHB][hapmap];0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs1080476	0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs12101586	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12442429	0.83[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs12899434	0.80[JPT][hapmap]
rs16963149	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16963151	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4430689	0.88[ASN][1000 genomes]
rs7164710	0.86[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs7166047	0.82[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs72623974	0.88[ASN][1000 genomes]
rs8027127	1.00[ASN][1000 genomes]
rs8027678	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8041864	0.81[CHB][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv904205	chr15:50228476-50286981	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50262800-50278200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr15:50265800-50277800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr15:50267600-50277800	Weak transcription	Spleen	Spleen
4	chr15:50268600-50281000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr15:50268600-50290400	Strong transcription	Primary hematopoietic stem cells	blood
6	chr15:50273200-50280000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr15:50274400-50277800	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr15:50274800-50279400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr15:50275000-50281000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr15:50275200-50277800	Weak transcription	Right Atrium	heart
11	chr15:50275400-50283200	Weak transcription	NHLF	lung
12	chr15:50275600-50277800	Weak transcription	Placenta	Placenta
13	chr15:50275600-50278400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr15:50276800-50281200	Weak transcription	Left Ventricle	heart
15	chr15:50277200-50279400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr15:50277400-50279600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr15:50277600-50277800	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr15:50277600-50278800	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr15:50277600-50279200	Enhancers	Stomach Smooth Muscle	stomach
20	chr15:50277600-50282200	Enhancers	Fetal Stomach	stomach
21	chr15:50277600-50282400	Enhancers	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links