Variant report

Variant	rs10222492
Chromosome Location	chr3:119100245-119100246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs544721	1.00[AMR][1000 genomes]
rs57797834	1.00[AMR][1000 genomes]
rs57828996	1.00[AMR][1000 genomes]
rs59988366	1.00[AMR][1000 genomes]
rs6650891	1.00[AMR][1000 genomes]
rs73854487	1.00[AMR][1000 genomes]
rs73854491	1.00[AMR][1000 genomes]
rs73854497	1.00[AMR][1000 genomes]
rs73857016	1.00[AMR][1000 genomes]
rs9830245	1.00[AMR][1000 genomes]
rs9850850	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv829694	chr3:119011488-119153579	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv3962	chr3:119094646-119135321	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119069400-119111400	Weak transcription	Fetal Intestine Small	intestine
2	chr3:119072000-119109200	Weak transcription	Brain Substantia Nigra	brain
3	chr3:119072000-119133800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr3:119072200-119100600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr3:119072200-119101400	Weak transcription	HSMM	muscle
6	chr3:119072200-119109600	Weak transcription	Colon Smooth Muscle	Colon
7	chr3:119072200-119114200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr3:119073000-119101000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr3:119076400-119101800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr3:119076400-119102000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr3:119076400-119109200	Weak transcription	Colonic Mucosa	Colon
12	chr3:119076400-119109200	Weak transcription	Esophagus	oesophagus
13	chr3:119076600-119101400	Weak transcription	Duodenum Mucosa	Duodenum
14	chr3:119078800-119111400	Weak transcription	Brain Hippocampus Middle	brain
15	chr3:119079000-119102000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr3:119079400-119109600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr3:119079800-119110000	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr3:119080000-119145600	Weak transcription	Fetal Kidney	kidney
19	chr3:119081200-119135600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr3:119081400-119114200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr3:119082800-119138000	Weak transcription	Small Intestine	intestine
22	chr3:119085000-119109200	Weak transcription	Pancreas	Pancrea
23	chr3:119085200-119139000	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr3:119086400-119110000	Weak transcription	Fetal Thymus	thymus
25	chr3:119087400-119101200	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr3:119087400-119101800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr3:119087800-119101000	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr3:119087800-119101800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr3:119088000-119101200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr3:119088000-119101800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr3:119088000-119134200	Weak transcription	NHDF-Ad	bronchial
32	chr3:119088200-119122400	Weak transcription	Brain Angular Gyrus	brain
33	chr3:119088400-119101200	Weak transcription	Primary B cells from peripheral blood	blood
34	chr3:119088600-119109200	Weak transcription	Rectal Smooth Muscle	rectum
35	chr3:119091800-119109200	Weak transcription	Gastric	stomach
36	chr3:119092800-119105600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr3:119093000-119103600	Strong transcription	Lung	lung
38	chr3:119093000-119103800	Strong transcription	Fetal Stomach	stomach
39	chr3:119093000-119116200	Weak transcription	Psoas Muscle	Psoas
40	chr3:119094400-119119600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr3:119094600-119108800	Weak transcription	Fetal Intestine Large	intestine
42	chr3:119095800-119102000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr3:119097000-119101800	Weak transcription	Aorta	Aorta
44	chr3:119097000-119102000	Weak transcription	Right Atrium	heart
45	chr3:119097000-119132600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr3:119097200-119109800	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr3:119097400-119103600	Strong transcription	Fetal Muscle Trunk	muscle
48	chr3:119097600-119109400	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr3:119097600-119120600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr3:119097800-119102000	Weak transcription	Primary hematopoietic stem cells	blood

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