Variant report

Variant	rs73857016
Chromosome Location	chr3:119067766-119067767
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:119012829..119015556-chr3:119066344..119068613,2	MCF-7	breast:
2	chr3:119040293..119043055-chr3:119065307..119067902,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000031081	Chromatin interaction
ENSG00000241155	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10222492	1.00[AMR][1000 genomes]
rs544721	1.00[AMR][1000 genomes]
rs57797834	1.00[AMR][1000 genomes]
rs57828996	1.00[AMR][1000 genomes]
rs59988366	1.00[AMR][1000 genomes]
rs60900492	1.00[AMR][1000 genomes]
rs6650891	1.00[AMR][1000 genomes]
rs73854487	1.00[AMR][1000 genomes]
rs73854491	1.00[AMR][1000 genomes]
rs73854497	1.00[AMR][1000 genomes]
rs9830245	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9850850	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv829694	chr3:119011488-119153579	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119042800-119070600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:119042800-119072000	Weak transcription	Thymus	Thymus
3	chr3:119043000-119069000	Weak transcription	Primary T cells from cord blood	blood
4	chr3:119049200-119071200	Weak transcription	Aorta	Aorta
5	chr3:119049600-119068000	Weak transcription	NH-A	brain
6	chr3:119050800-119075800	Weak transcription	Pancreas	Pancrea
7	chr3:119053200-119087200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:119053400-119068200	Weak transcription	Right Ventricle	heart
9	chr3:119053400-119087000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr3:119053600-119067800	Weak transcription	Fetal Lung	lung
11	chr3:119053600-119071400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:119056400-119067800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:119056400-119068200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr3:119056400-119071600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:119057800-119068000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:119063000-119070600	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr3:119063400-119068600	Weak transcription	GM12878-XiMat	blood
18	chr3:119063800-119068200	Weak transcription	Osteobl	bone
19	chr3:119064000-119068200	Weak transcription	Brain Substantia Nigra	brain
20	chr3:119064400-119073200	Enhancers	Adipose Nuclei	Adipose
21	chr3:119064600-119067800	Weak transcription	Brain Hippocampus Middle	brain
22	chr3:119064600-119068200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr3:119064800-119068200	Weak transcription	Placenta	Placenta
24	chr3:119064800-119071200	Weak transcription	Spleen	Spleen
25	chr3:119065000-119068200	Weak transcription	Ovary	ovary
26	chr3:119065000-119070400	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr3:119065000-119070600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr3:119065000-119071800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr3:119065200-119068200	Weak transcription	Brain Cingulate Gyrus	brain
30	chr3:119065200-119068200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr3:119065200-119070600	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr3:119065400-119068400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr3:119065400-119068600	Weak transcription	Primary hematopoietic stem cells	blood
34	chr3:119065600-119068000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr3:119065800-119068400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr3:119065800-119068400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr3:119065800-119068600	Enhancers	Right Atrium	heart
38	chr3:119065800-119069600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr3:119066000-119067800	Weak transcription	HSMMtube	muscle
40	chr3:119066200-119068200	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr3:119066200-119069800	Weak transcription	Small Intestine	intestine
42	chr3:119066200-119071000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr3:119066200-119071600	Weak transcription	Colon Smooth Muscle	Colon
44	chr3:119066400-119068200	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr3:119066600-119068000	Weak transcription	Fetal Muscle Leg	muscle
46	chr3:119066600-119068200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr3:119066600-119070200	Weak transcription	Psoas Muscle	Psoas
48	chr3:119066800-119068000	Enhancers	HUES6 Cell Line	embryonic stem cell
49	chr3:119066800-119068000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr3:119066800-119068200	Enhancers	HUVEC	blood vessel

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