Variant report

Variant	rs60900492
Chromosome Location	chr3:118903316-118903317
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:118902403..118905431-chr3:118923096..118925754,3	MCF-7	breast:
2	chr3:118898555..118900454-chr3:118903177..118905201,3	K562	blood:
3	chr3:118894224..118896786-chr3:118901014..118905072,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs57797834	1.00[AMR][1000 genomes]
rs57828996	1.00[AMR][1000 genomes]
rs59988366	1.00[AMR][1000 genomes]
rs6650891	1.00[AMR][1000 genomes]
rs73854487	1.00[AMR][1000 genomes]
rs73854491	1.00[AMR][1000 genomes]
rs73854497	1.00[AMR][1000 genomes]
rs73857016	1.00[AMR][1000 genomes]
rs9830245	1.00[AMR][1000 genomes]
rs9850850	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	esv18354	chr3:118855337-119000251	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv591361	chr3:118901832-118909987	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118884000-118914200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:118899000-118905000	Enhancers	Stomach Mucosa	stomach
3	chr3:118899600-118905200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:118899800-118904400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:118899800-118904800	Enhancers	Placenta Amnion	Placenta Amnion
6	chr3:118900000-118904800	Enhancers	HMEC	breast
7	chr3:118900600-118904800	Enhancers	NHEK	skin
8	chr3:118900600-118908400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:118901000-118904000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:118901000-118904000	Weak transcription	NHDF-Ad	bronchial
11	chr3:118901000-118905400	Enhancers	Fetal Intestine Small	intestine
12	chr3:118901000-118924200	Weak transcription	Pancreas	Pancrea
13	chr3:118901400-118904000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr3:118901600-118903800	Enhancers	A549	lung
15	chr3:118902200-118905000	Enhancers	Placenta	Placenta
16	chr3:118902600-118903400	Enhancers	Fetal Intestine Large	intestine
17	chr3:118902600-118904800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:118902800-118903400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr3:118902800-118903400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:118902800-118904600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:118902800-118904800	Enhancers	Osteobl	bone
22	chr3:118903200-118903400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr3:118903200-118903600	Weak transcription	NH-A	brain

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