Variant report

Variant	rs57797834
Chromosome Location	chr3:119051983-119051984
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:119041710..119043371-chr3:119051543..119054199,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10222492	1.00[AMR][1000 genomes]
rs57828996	1.00[AMR][1000 genomes]
rs59988366	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60900492	1.00[AMR][1000 genomes]
rs6650891	1.00[AMR][1000 genomes]
rs73854487	1.00[AMR][1000 genomes]
rs73854491	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854497	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73857016	1.00[AMR][1000 genomes]
rs9830245	1.00[AMR][1000 genomes]
rs9850850	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv829694	chr3:119011488-119153579	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119042600-119054000	Weak transcription	NHLF	lung
2	chr3:119042600-119055600	Weak transcription	Fetal Brain Male	brain
3	chr3:119042800-119052800	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:119042800-119053000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:119042800-119056000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:119042800-119070600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr3:119042800-119072000	Weak transcription	Thymus	Thymus
8	chr3:119043000-119069000	Weak transcription	Primary T cells from cord blood	blood
9	chr3:119043200-119062400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr3:119044400-119052000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr3:119046000-119052800	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr3:119046000-119056000	Weak transcription	Fetal Thymus	thymus
13	chr3:119046000-119064200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr3:119046000-119064600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr3:119046800-119056000	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr3:119047000-119053800	Enhancers	Fetal Stomach	stomach
17	chr3:119047200-119052000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:119047800-119053600	Enhancers	Ovary	ovary
19	chr3:119048000-119052000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:119048000-119054600	Enhancers	Fetal Heart	heart
21	chr3:119048800-119052800	Weak transcription	Colonic Mucosa	Colon
22	chr3:119048800-119062800	Weak transcription	Osteobl	bone
23	chr3:119049000-119052800	Weak transcription	Brain Germinal Matrix	brain
24	chr3:119049200-119052000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr3:119049200-119052600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr3:119049200-119062200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr3:119049200-119071200	Weak transcription	Aorta	Aorta
28	chr3:119049400-119052000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr3:119049400-119052600	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr3:119049400-119052800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr3:119049400-119056000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr3:119049600-119068000	Weak transcription	NH-A	brain
33	chr3:119050000-119052800	Weak transcription	Right Ventricle	heart
34	chr3:119050000-119062000	Weak transcription	Placenta	Placenta
35	chr3:119050200-119052000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr3:119050400-119052000	Enhancers	GM12878-XiMat	blood
37	chr3:119050400-119052000	Enhancers	NHDF-Ad	bronchial
38	chr3:119050400-119053600	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr3:119050400-119053800	Enhancers	Adipose Nuclei	Adipose
40	chr3:119050600-119053800	Enhancers	Stomach Smooth Muscle	stomach
41	chr3:119050800-119052000	Enhancers	Lung	lung
42	chr3:119050800-119052200	Enhancers	HepG2	liver
43	chr3:119050800-119052800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr3:119050800-119052800	Weak transcription	Brain Anterior Caudate	brain
45	chr3:119050800-119053000	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr3:119050800-119056000	Weak transcription	HSMM	muscle
47	chr3:119050800-119064600	Weak transcription	HSMMtube	muscle
48	chr3:119050800-119075800	Weak transcription	Pancreas	Pancrea
49	chr3:119051000-119053200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr3:119051000-119053200	Weak transcription	Psoas Muscle	Psoas

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