Variant report

Variant	rs10224094
Chromosome Location	chr7:50487065-50487066
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1002371	0.92[ASN][1000 genomes]
rs10235371	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10236132	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10250794	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10261922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10270682	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10273657	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11575544	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11575575	0.92[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11980407	1.00[JPT][hapmap]
rs28573146	0.92[ASN][1000 genomes]
rs55693922	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55782136	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62445903	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6944650	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6972091	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9656639	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv515738	chr7:50476109-50494207	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50483400-50488800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr7:50484600-50489000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:50484600-50489000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:50484800-50488400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr7:50484800-50488800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:50485000-50490800	Weak transcription	Spleen	Spleen
7	chr7:50485400-50490400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr7:50486200-50513200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr7:50486400-50488800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr7:50486400-50491600	Weak transcription	Primary B cells from peripheral blood	blood
11	chr7:50486600-50489000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr7:50486600-50495000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr7:50486800-50488200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr7:50486800-50491400	Weak transcription	Fetal Thymus	thymus
15	chr7:50487000-50488000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr7:50487000-50489000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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