Variant report

Variant	rs55693922
Chromosome Location	chr7:50520659-50520660
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1002371	0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10224094	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10235371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10236132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10250794	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10261922	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10270682	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10273657	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11575544	0.92[ASN][1000 genomes]
rs11575575	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28573146	0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs55782136	0.87[ASN][1000 genomes]
rs62445903	0.87[ASN][1000 genomes]
rs6944650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6972091	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9656639	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50518800-50521600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:50518800-50522600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:50518800-50535400	Weak transcription	Pancreas	Pancrea
4	chr7:50518800-50535600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr7:50518800-50535600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr7:50518800-50535600	Weak transcription	HepG2	liver
7	chr7:50519000-50523400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr7:50519000-50523400	Weak transcription	Liver	Liver
9	chr7:50519000-50523400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr7:50519000-50523800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr7:50519000-50523800	Weak transcription	Fetal Intestine Small	intestine
12	chr7:50519000-50524400	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr7:50519000-50529400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr7:50519200-50523400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr7:50519200-50524000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr7:50519200-50524000	Weak transcription	Fetal Intestine Large	intestine
17	chr7:50519400-50522600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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