Variant report

Variant	rs6972091
Chromosome Location	chr7:50499535-50499536
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1002371	0.91[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10224094	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10235371	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10236132	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10250794	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10261922	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10270682	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10273657	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11575544	0.92[ASN][1000 genomes]
rs11575575	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28573146	0.91[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs55693922	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55782136	0.87[ASN][1000 genomes]
rs62445903	0.87[ASN][1000 genomes]
rs6944650	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9656639	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50486200-50513200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr7:50493400-50505800	Weak transcription	Thymus	Thymus
3	chr7:50495200-50505800	Weak transcription	Fetal Intestine Large	intestine
4	chr7:50495200-50513000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr7:50495200-50517200	Weak transcription	Stomach Mucosa	stomach
6	chr7:50495600-50513800	Weak transcription	HepG2	liver
7	chr7:50496000-50513000	Weak transcription	Gastric	stomach
8	chr7:50496200-50517600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:50496800-50505800	Weak transcription	GM12878-XiMat	blood
10	chr7:50498000-50506800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr7:50499200-50499600	Enhancers	Fetal Lung	lung
12	chr7:50499200-50500000	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr7:50499400-50506000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr7:50499400-50513000	Weak transcription	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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