Variant report

Variant	rs10224321
Chromosome Location	chr7:140627998-140627999
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10225223	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10233009	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10238472	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10241940	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10245178	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10245975	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10252634	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10255271	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10255476	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10258866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10271135	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10278608	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10279071	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974522	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11977231	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13437830	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13438167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28371100	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017980	chr7:140601863-140721368	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1030195	chr7:140615828-140746345	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140625400-140628000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr7:140625400-140628000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr7:140625600-140628000	Weak transcription	NHEK	skin
4	chr7:140625600-140628200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:140626000-140628200	Weak transcription	Aorta	Aorta
6	chr7:140627200-140628800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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