Variant report
| Variant | rs10258866 |
|---|---|
| Chromosome Location | chr7:140629750-140629751 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:140623737..140625626-chr7:140627755..140630191,2 | MCF-7 | breast: | |
| 2 | chr7:140624423..140627131-chr7:140627332..140629755,3 | MCF-7 | breast: | |
| 3 | chr7:140627633..140629820-chr7:140638896..140641697,2 | K562 | blood: | |
| 4 | chr7:140628908..140630536-chr7:140632572..140635198,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000271611 | Chromatin interaction |
| ENSG00000157764 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10224321 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10225223 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10233009 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10238472 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10241940 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10245178 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10245975 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10252634 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10255271 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10255476 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10271135 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10278608 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10279071 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11974522 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11977231 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13437830 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13438167 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28371100 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1017980 | chr7:140601863-140721368 | Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| 2 | nsv1030195 | chr7:140615828-140746345 | Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
