Variant report

Variant	rs11977231
Chromosome Location	chr7:140586899-140586900
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140586780..140588546-chr7:140616185..140618447,2	K562	blood:
2	chr7:140585371..140588493-chr7:140589347..140593837,4	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10224321	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10225223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10233009	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10238472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10241940	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10245178	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10245975	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10252634	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10255257	0.83[AFR][1000 genomes]
rs10255271	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10255476	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10258866	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10271135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10278608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10279071	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10280112	0.84[AFR][1000 genomes]
rs10280479	0.83[AFR][1000 genomes]
rs11974522	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11979399	0.83[AFR][1000 genomes]
rs13437830	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13438167	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28371100	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28505512	0.88[AFR][1000 genomes]
rs28627200	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351231	chr7:140390303-140588539	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv831158	chr7:140392222-140602315	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv518139	chr7:140512661-140622355	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1029363	chr7:140567136-140594073	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
5	esv2761117	chr7:140582100-140594085	Enhancers Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140549000-140594400	Weak transcription	Fetal Thymus	thymus
2	chr7:140570600-140606000	Weak transcription	Fetal Intestine Small	intestine
3	chr7:140573600-140587800	Weak transcription	Left Ventricle	heart
4	chr7:140577000-140591000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr7:140577600-140589600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr7:140577600-140598600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr7:140580400-140603200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr7:140581400-140587400	Weak transcription	Lung	lung
9	chr7:140581800-140587200	Weak transcription	Fetal Heart	heart
10	chr7:140581800-140588000	Weak transcription	Pancreas	Pancrea
11	chr7:140582600-140599600	Weak transcription	Gastric	stomach
12	chr7:140584000-140589600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr7:140585200-140587400	Enhancers	GM12878-XiMat	blood
14	chr7:140585200-140589000	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr7:140585600-140587200	Enhancers	Brain Substantia Nigra	brain
16	chr7:140585600-140587600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr7:140585600-140587600	Enhancers	Colon Smooth Muscle	Colon
18	chr7:140585600-140587800	Enhancers	Primary B cells from peripheral blood	blood
19	chr7:140585800-140587400	Enhancers	Primary T cells from cord blood	blood
20	chr7:140586000-140587400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr7:140586000-140588000	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr7:140586000-140590000	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr7:140586000-140591600	Enhancers	K562	blood
24	chr7:140586000-140599400	Weak transcription	Brain Hippocampus Middle	brain
25	chr7:140586000-140611600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr7:140586200-140587000	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr7:140586200-140587600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr7:140586200-140587800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr7:140586400-140587000	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr7:140586400-140587600	Weak transcription	Ovary	ovary
31	chr7:140586400-140587800	Weak transcription	Right Atrium	heart
32	chr7:140586400-140592800	Weak transcription	Psoas Muscle	Psoas
33	chr7:140586400-140595000	Weak transcription	Primary B cells from cord blood	blood
34	chr7:140586400-140598600	Weak transcription	Brain Anterior Caudate	brain
35	chr7:140586400-140599600	Weak transcription	Adipose Nuclei	Adipose
36	chr7:140586400-140602000	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr7:140586600-140587000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr7:140586600-140587400	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr7:140586600-140587600	Enhancers	Primary hematopoietic stem cells	blood
40	chr7:140586600-140589800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr7:140586800-140587200	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr7:140586800-140587200	Enhancers	Duodenum Mucosa	Duodenum
43	chr7:140586800-140587400	Enhancers	Fetal Lung	lung
44	chr7:140586800-140587600	Enhancers	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links