Variant report

Variant	rs10255476
Chromosome Location	chr7:140587914-140587915
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:140559633..140561782-chr7:140587885..140590240,2	MCF-7	breast:
2	chr7:140586780..140588546-chr7:140616185..140618447,2	K562	blood:
3	chr7:140585371..140588493-chr7:140589347..140593837,4	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10224321	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10225223	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10225852	0.85[AFR][1000 genomes]
rs10227524	0.85[AFR][1000 genomes]
rs10229313	0.82[AFR][1000 genomes]
rs10233009	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10233557	0.82[AFR][1000 genomes]
rs10236260	0.85[AFR][1000 genomes]
rs10236694	0.81[AFR][1000 genomes]
rs10238472	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10241940	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10245178	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10245975	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10251357	0.82[AFR][1000 genomes]
rs10252634	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10255257	0.89[AFR][1000 genomes]
rs10255271	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10258866	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10271135	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10278608	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10279071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10280112	0.84[AFR][1000 genomes]
rs10280479	0.89[AFR][1000 genomes]
rs11974522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11977231	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11979399	0.89[AFR][1000 genomes]
rs11979913	0.85[AFR][1000 genomes]
rs11984018	0.85[AFR][1000 genomes]
rs13437830	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13438167	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28371100	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28481617	0.82[AFR][1000 genomes]
rs28505512	0.84[AFR][1000 genomes]
rs28612236	0.85[AFR][1000 genomes]
rs28627200	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351231	chr7:140390303-140588539	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv831158	chr7:140392222-140602315	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv518139	chr7:140512661-140622355	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1029363	chr7:140567136-140594073	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
5	esv2761117	chr7:140582100-140594085	Enhancers Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140549000-140594400	Weak transcription	Fetal Thymus	thymus
2	chr7:140570600-140606000	Weak transcription	Fetal Intestine Small	intestine
3	chr7:140577000-140591000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr7:140577600-140589600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr7:140577600-140598600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:140580400-140603200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr7:140581800-140588000	Weak transcription	Pancreas	Pancrea
8	chr7:140582600-140599600	Weak transcription	Gastric	stomach
9	chr7:140584000-140589600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr7:140585200-140589000	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr7:140586000-140588000	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr7:140586000-140590000	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr7:140586000-140591600	Enhancers	K562	blood
14	chr7:140586000-140599400	Weak transcription	Brain Hippocampus Middle	brain
15	chr7:140586000-140611600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:140586400-140592800	Weak transcription	Psoas Muscle	Psoas
17	chr7:140586400-140595000	Weak transcription	Primary B cells from cord blood	blood
18	chr7:140586400-140598600	Weak transcription	Brain Anterior Caudate	brain
19	chr7:140586400-140599600	Weak transcription	Adipose Nuclei	Adipose
20	chr7:140586400-140602000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr7:140586600-140589800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr7:140587000-140588600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr7:140587000-140589600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr7:140587000-140595800	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr7:140587200-140588200	Enhancers	Fetal Heart	heart
26	chr7:140587200-140588400	Enhancers	Hela-S3	cervix
27	chr7:140587200-140588800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr7:140587200-140589600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr7:140587200-140591000	Weak transcription	Duodenum Mucosa	Duodenum
30	chr7:140587200-140599400	Weak transcription	Brain Substantia Nigra	brain
31	chr7:140587400-140588000	Enhancers	Lung	lung
32	chr7:140587400-140588400	Weak transcription	Rectal Smooth Muscle	rectum
33	chr7:140587400-140589400	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr7:140587400-140589600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr7:140587400-140589600	Weak transcription	GM12878-XiMat	blood
36	chr7:140587400-140591600	Weak transcription	Primary T cells from cord blood	blood
37	chr7:140587400-140599600	Weak transcription	Fetal Lung	lung
38	chr7:140587600-140588200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr7:140587600-140588600	Enhancers	Ovary	ovary
40	chr7:140587600-140589400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr7:140587600-140589600	Weak transcription	Primary hematopoietic stem cells	blood
42	chr7:140587600-140589600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr7:140587600-140590200	Weak transcription	Colon Smooth Muscle	Colon
44	chr7:140587600-140596800	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr7:140587800-140588200	Enhancers	Liver	Liver
46	chr7:140587800-140588600	Enhancers	Right Atrium	heart
47	chr7:140587800-140588800	Enhancers	Left Ventricle	heart
48	chr7:140587800-140589600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr7:140587800-140601800	Weak transcription	Primary B cells from peripheral blood	blood

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