Variant report

Variant	rs10228613
Chromosome Location	chr7:136276186-136276187
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10215057	0.82[AMR][1000 genomes]
rs10215760	0.82[AMR][1000 genomes]
rs10224392	1.00[AFR][1000 genomes]
rs10226508	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10242964	0.82[AMR][1000 genomes]
rs12669711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1364743	0.82[AMR][1000 genomes]
rs1425155	0.82[AMR][1000 genomes]
rs1425163	0.82[AMR][1000 genomes]
rs1425164	0.82[AMR][1000 genomes]
rs1425165	0.82[AMR][1000 genomes]
rs1425166	0.82[AMR][1000 genomes]
rs1593317	0.82[AMR][1000 genomes]
rs1946328	0.82[AMR][1000 genomes]
rs2081439	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2349741	0.82[AMR][1000 genomes]
rs2350167	0.82[AMR][1000 genomes]
rs2350178	1.00[ASN][1000 genomes]
rs4257958	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4584099	0.82[AMR][1000 genomes]
rs4634579	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4732215	0.81[EUR][1000 genomes]
rs4732216	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4732217	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6467665	0.82[AMR][1000 genomes]
rs6947349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6955097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6966702	0.82[AMR][1000 genomes]
rs73155058	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7788349	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7796090	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7808933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9642050	0.82[AMR][1000 genomes]
rs9642054	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9691089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs980193	0.82[AMR][1000 genomes]
rs980194	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518439	chr7:136134265-136452082	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136264000-136276400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:136275400-136276600	Enhancers	Colon Smooth Muscle	Colon
3	chr7:136275800-136276200	Weak transcription	Fetal Stomach	stomach
4	chr7:136275800-136276600	Enhancers	Rectal Smooth Muscle	rectum

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