Variant report

Variant	rs1425166
Chromosome Location	chr7:136208207-136208208
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:136206756..136209686-chr7:136215975..136218228,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10215057	1.00[AMR][1000 genomes]
rs10215760	1.00[AMR][1000 genomes]
rs10226508	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10228613	0.82[AMR][1000 genomes]
rs10242964	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10249296	0.82[EUR][1000 genomes]
rs10259832	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12669711	0.82[AMR][1000 genomes]
rs1364743	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1425155	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1425163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1425164	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1425165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1593317	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1946328	1.00[CEU][hapmap];0.97[GIH][hapmap];0.88[TSI][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2081439	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2349741	1.00[AMR][1000 genomes]
rs2349743	0.91[AMR][1000 genomes]
rs2350167	1.00[AMR][1000 genomes]
rs4257958	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4584099	1.00[AMR][1000 genomes]
rs4732215	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4732216	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4732217	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6467665	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6945197	0.84[AMR][1000 genomes]
rs6946561	1.00[CEU][hapmap]
rs6947349	0.82[AMR][1000 genomes]
rs6955097	0.82[AMR][1000 genomes]
rs6966702	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73155058	0.91[AMR][1000 genomes]
rs7788349	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7796090	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7808933	0.82[AMR][1000 genomes]
rs9642050	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9642054	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9691089	0.82[AMR][1000 genomes]
rs980193	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs980194	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518439	chr7:136134265-136452082	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136208000-136208400	Enhancers	Fetal Stomach	stomach
2	chr7:136208000-136209200	Enhancers	NH-A	brain
3	chr7:136208200-136209000	Enhancers	Placenta Amnion	Placenta Amnion

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