Variant report

Variant	rs10242964
Chromosome Location	chr7:136179632-136179633
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10215057	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10215760	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10226508	0.91[AMR][1000 genomes]
rs10228613	0.82[AMR][1000 genomes]
rs10249296	1.00[EUR][1000 genomes]
rs10259832	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12669711	0.82[AMR][1000 genomes]
rs1364743	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1425155	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1425163	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1425164	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1425165	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1425166	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1593317	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1946328	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2081439	0.91[AMR][1000 genomes]
rs2349741	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2349743	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2350167	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4257958	0.82[AMR][1000 genomes]
rs4584099	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4732215	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4732216	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4732217	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6467665	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6945197	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6946561	1.00[CEU][hapmap]
rs6947349	0.82[AMR][1000 genomes]
rs6955097	0.82[AMR][1000 genomes]
rs6966702	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155058	0.91[AMR][1000 genomes]
rs7788349	0.82[AMR][1000 genomes]
rs7796090	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7808933	0.82[AMR][1000 genomes]
rs9642050	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9642054	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9691089	0.82[AMR][1000 genomes]
rs980193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs980194	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518439	chr7:136134265-136452082	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136175200-136180800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:136175400-136179800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:136177800-136181200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr7:136178200-136181200	Weak transcription	Brain Germinal Matrix	brain

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