Variant report

No.	Distal block	Cell Line	Cell type
1	chr9:116545594..116548048-chr9:116548545..116550561,2	MCF-7	breast:
2	chr9:116505256..116507390-chr9:116545375..116548005,2	K562	blood:
3	chr9:116537155..116541005-chr9:116544045..116545927,3	K562	blood:

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10759656	0.87[CEU][hapmap]
rs10817522	0.83[AFR][1000 genomes]
rs10981915	0.93[CEU][hapmap]
rs10981927	0.93[ASN][1000 genomes]
rs10981929	0.83[AFR][1000 genomes]
rs10981936	0.83[AFR][1000 genomes]
rs10981939	0.83[AFR][1000 genomes]
rs10981947	0.83[AFR][1000 genomes]
rs10981953	0.83[AFR][1000 genomes]
rs10981961	0.87[YRI][hapmap];0.83[AFR][1000 genomes]
rs10981969	1.00[YRI][hapmap]
rs10981970	0.83[AFR][1000 genomes]
rs10981971	0.83[AFR][1000 genomes]
rs10981974	0.83[AFR][1000 genomes]
rs10981975	0.87[YRI][hapmap];0.83[AFR][1000 genomes]
rs10981976	0.83[AFR][1000 genomes]
rs12237042	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs12237457	0.83[AFR][1000 genomes]
rs12346446	0.93[CEU][hapmap]
rs12683641	0.83[AFR][1000 genomes]
rs1326325	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1383371	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1409381	0.87[CEU][hapmap]
rs4979281	0.93[CEU][hapmap]
rs57490136	0.83[AFR][1000 genomes]
rs57961249	0.83[AFR][1000 genomes]
rs58744729	0.83[AFR][1000 genomes]
rs7047016	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7847036	0.87[CEU][hapmap]
rs7866886	0.87[CEU][hapmap]
rs987072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1022949	POLE3	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116539000-116551400	Weak transcription	Fetal Kidney	kidney
2	chr9:116543200-116550200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:116543800-116547200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr9:116544600-116547000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr9:116544600-116547000	Weak transcription	Monocytes-CD14+_RO01746	blood

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