Variant report

Variant	rs10981936
Chromosome Location	chr9:116569775-116569776
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:116569447..116570300-chr9:117052628..117053509,2	MCF-7	breast:
2	chr9:116569406..116570272-chr9:116810108..116810697,3	MCF-7	breast:
3	chr9:116569349..116569898-chr9:116795260..116795854,2	K562	blood:
4	chr9:116569758..116570851-chr9:116725009..116725871,4	MCF-7	breast:
5	chr9:116569351..116570307-chr9:116724834..116725972,6	K562	blood:
6	chr9:116569390..116569990-chr9:116732524..116733419,2	MCF-7	breast:
7	chr9:116569470..116570687-chr9:116760574..116761781,7	MCF-7	breast:
8	chr9:116569383..116570266-chr9:116795410..116796177,2	MCF-7	breast:

No data

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1022949	0.83[AFR][1000 genomes]
rs10817522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10817525	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10817526	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10817527	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10981927	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10981929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10981933	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10981934	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10981937	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10981938	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10981939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10981942	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10981943	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10981944	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10981946	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10981947	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10981953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10981954	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10981961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10981969	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10981970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10981971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10981972	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10981973	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10981974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10981975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10981976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10981979	0.82[EUR][1000 genomes]
rs10981980	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10981992	0.89[EUR][1000 genomes]
rs11536809	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11560574	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12237042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12237457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12683246	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12683412	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12683629	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12683641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13302495	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2418255	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2900567	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55742527	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57490136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57961249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58226726	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58744729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60824015	0.86[ASN][1000 genomes]
rs61389135	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7038455	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73548564	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs987072	0.83[AFR][1000 genomes]
rs988015	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116557800-116569800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:116567000-116569800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr9:116569400-116569800	Enhancers	Ovary	ovary
4	chr9:116569600-116569800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr9:116569600-116569800	Enhancers	Adipose Nuclei	Adipose
6	chr9:116569600-116569800	Flanking Active TSS	Colon Smooth Muscle	Colon
7	chr9:116569600-116569800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr9:116569600-116569800	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr9:116569600-116569800	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr9:116569600-116570000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:116569600-116570000	Active TSS	Brain Hippocampus Middle	brain
12	chr9:116569600-116570000	Active TSS	Fetal Kidney	kidney
13	chr9:116569600-116570400	Enhancers	Liver	Liver

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