Variant report

Variant	rs10981992
Chromosome Location	chr9:116645428-116645429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116643565..116646424-chr9:116657254..116659001,2	K562	blood:
2	chr9:116638072..116644235-chr9:116644601..116650376,14	K562	blood:
3	chr9:116636676..116640667-chr9:116641592..116647526,6	MCF-7	breast:
4	chr9:116564524..116566255-chr9:116644451..116646810,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157657	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10759662	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs10817522	0.89[EUR][1000 genomes]
rs10817525	0.89[EUR][1000 genomes]
rs10817526	0.89[EUR][1000 genomes]
rs10817527	0.89[EUR][1000 genomes]
rs10817534	0.89[JPT][hapmap];1.00[AMR][1000 genomes]
rs10981927	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10981929	0.89[EUR][1000 genomes]
rs10981936	0.89[EUR][1000 genomes]
rs10981937	0.89[EUR][1000 genomes]
rs10981938	0.89[EUR][1000 genomes]
rs10981939	0.89[EUR][1000 genomes]
rs10981942	0.89[EUR][1000 genomes]
rs10981943	0.89[EUR][1000 genomes]
rs10981944	0.89[EUR][1000 genomes]
rs10981946	0.89[EUR][1000 genomes]
rs10981947	0.89[EUR][1000 genomes]
rs10981953	0.89[EUR][1000 genomes]
rs10981954	0.89[EUR][1000 genomes]
rs10981961	0.87[YRI][hapmap];0.89[EUR][1000 genomes]
rs10981969	0.82[YRI][hapmap];0.89[EUR][1000 genomes]
rs10981970	0.89[EUR][1000 genomes]
rs10981971	0.89[EUR][1000 genomes]
rs10981973	0.89[EUR][1000 genomes]
rs10981974	0.89[EUR][1000 genomes]
rs10981975	0.87[YRI][hapmap];0.89[EUR][1000 genomes]
rs10981976	0.89[EUR][1000 genomes]
rs10981979	0.90[ASN][1000 genomes]
rs10981980	0.89[EUR][1000 genomes]
rs10981989	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10981999	1.00[AMR][1000 genomes]
rs10982002	1.00[AMR][1000 genomes]
rs10982004	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11536809	0.89[EUR][1000 genomes]
rs11560574	0.89[EUR][1000 genomes]
rs12237042	0.85[YRI][hapmap];0.89[EUR][1000 genomes]
rs12237457	0.89[EUR][1000 genomes]
rs12683412	0.89[EUR][1000 genomes]
rs12683629	0.89[EUR][1000 genomes]
rs12683641	0.89[EUR][1000 genomes]
rs13302495	0.89[EUR][1000 genomes]
rs1571578	0.89[JPT][hapmap]
rs2418255	0.89[EUR][1000 genomes]
rs2900567	0.89[EUR][1000 genomes]
rs55742527	0.89[EUR][1000 genomes]
rs57490136	0.89[EUR][1000 genomes]
rs57961249	0.89[EUR][1000 genomes]
rs58226726	0.89[EUR][1000 genomes]
rs58744729	0.89[EUR][1000 genomes]
rs61389135	0.89[EUR][1000 genomes]
rs7038455	0.89[EUR][1000 genomes]
rs73548564	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116639200-116646400	Weak transcription	Psoas Muscle	Psoas
2	chr9:116639200-116647000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:116639200-116647400	Weak transcription	Esophagus	oesophagus
4	chr9:116639200-116647800	Weak transcription	Left Ventricle	heart
5	chr9:116639200-116652800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:116639200-116663400	Weak transcription	Gastric	stomach
7	chr9:116639600-116646800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr9:116639600-116647400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr9:116639600-116648000	Weak transcription	Thymus	Thymus
10	chr9:116639600-116648200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr9:116639600-116648400	Weak transcription	Colonic Mucosa	Colon
12	chr9:116639800-116647000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr9:116639800-116647200	Weak transcription	Stomach Mucosa	stomach
14	chr9:116639800-116647400	Weak transcription	NHEK	skin
15	chr9:116639800-116648200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr9:116639800-116648200	Weak transcription	Duodenum Mucosa	Duodenum
17	chr9:116639800-116648400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr9:116639800-116648400	Weak transcription	Brain Cingulate Gyrus	brain
19	chr9:116640000-116647200	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr9:116640000-116647800	Weak transcription	Primary hematopoietic stem cells	blood
21	chr9:116640000-116648200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr9:116640200-116646800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr9:116640200-116648200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr9:116640400-116648000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr9:116640600-116646800	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr9:116640800-116647000	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr9:116640800-116648200	Weak transcription	A549	lung
28	chr9:116640800-116648400	Weak transcription	HSMMtube	muscle
29	chr9:116641000-116646800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr9:116641000-116646800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr9:116641200-116646800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr9:116641200-116647400	Weak transcription	NH-A	brain
33	chr9:116641200-116648000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr9:116641200-116648000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr9:116641200-116648200	Weak transcription	Fetal Intestine Small	intestine
36	chr9:116641600-116647000	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr9:116642000-116647000	Weak transcription	HMEC	breast
38	chr9:116642000-116648200	Weak transcription	Brain Anterior Caudate	brain
39	chr9:116642000-116649400	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr9:116642400-116647800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr9:116642400-116648200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr9:116642600-116646000	Enhancers	Ovary	ovary
43	chr9:116642600-116646800	Enhancers	K562	blood
44	chr9:116642600-116647000	Weak transcription	Osteobl	bone
45	chr9:116642600-116647800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr9:116642600-116647800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr9:116642600-116648000	Weak transcription	Adipose Nuclei	Adipose
48	chr9:116642600-116648600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr9:116642800-116646600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr9:116642800-116647400	Weak transcription	HSMM	muscle

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