Variant report

Variant	rs10981927
Chromosome Location	chr9:116550539-116550540
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116545594..116548048-chr9:116548545..116550561,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1022949	0.93[ASN][1000 genomes]
rs10817522	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10817525	1.00[EUR][1000 genomes]
rs10817526	1.00[EUR][1000 genomes]
rs10817527	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[EUR][1000 genomes]
rs10981929	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10981933	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10981934	0.90[EUR][1000 genomes]
rs10981936	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10981937	1.00[EUR][1000 genomes]
rs10981938	1.00[EUR][1000 genomes]
rs10981939	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10981942	1.00[EUR][1000 genomes]
rs10981943	1.00[EUR][1000 genomes]
rs10981944	1.00[EUR][1000 genomes]
rs10981946	1.00[EUR][1000 genomes]
rs10981947	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10981953	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10981954	1.00[EUR][1000 genomes]
rs10981961	1.00[CEU][hapmap];0.82[JPT][hapmap];0.87[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10981969	1.00[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10981970	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10981971	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10981972	0.90[EUR][1000 genomes]
rs10981973	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10981974	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10981975	1.00[CEU][hapmap];0.82[JPT][hapmap];0.87[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10981976	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10981979	0.82[EUR][1000 genomes]
rs10981980	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10981992	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11536809	1.00[EUR][1000 genomes]
rs11560574	1.00[EUR][1000 genomes]
rs12237042	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12237457	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12683246	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12683412	1.00[EUR][1000 genomes]
rs12683629	1.00[EUR][1000 genomes]
rs12683641	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1326325	0.92[ASN][1000 genomes]
rs13302495	1.00[EUR][1000 genomes]
rs1383371	0.85[ASN][1000 genomes]
rs2418255	1.00[EUR][1000 genomes]
rs2900567	1.00[EUR][1000 genomes]
rs55742527	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57490136	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57961249	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58226726	1.00[EUR][1000 genomes]
rs58744729	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61389135	1.00[EUR][1000 genomes]
rs7020963	1.00[CEU][hapmap]
rs7038455	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes]
rs7047016	0.85[ASN][1000 genomes]
rs73548564	1.00[EUR][1000 genomes]
rs987072	0.94[ASN][1000 genomes]
rs988015	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116539000-116551400	Weak transcription	Fetal Kidney	kidney
2	chr9:116549800-116551800	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr9:116550000-116550800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr9:116550000-116551800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr9:116550000-116553800	Enhancers	Brain Germinal Matrix	brain
6	chr9:116550200-116550600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr9:116550200-116551000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:116550400-116550600	Bivalent Enhancer	HSMMtube	muscle
9	chr9:116550400-116551200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr9:116550400-116551400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr9:116550400-116551400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr9:116550400-116551400	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr9:116550400-116551400	Enhancers	Fetal Lung	lung
14	chr9:116550400-116551400	Enhancers	Fetal Muscle Leg	muscle
15	chr9:116550400-116551400	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links