Variant report

Variant	rs10981979
Chromosome Location	chr9:116622547-116622548
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116621399..116624032-chr9:116637278..116640167,3	MCF-7	breast:
2	chr9:116622477..116624312-chr9:116649201..116651744,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157657	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10817522	0.82[EUR][1000 genomes]
rs10817525	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10817526	0.82[EUR][1000 genomes]
rs10817527	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10981927	0.82[EUR][1000 genomes]
rs10981929	0.82[EUR][1000 genomes]
rs10981936	0.82[EUR][1000 genomes]
rs10981937	0.82[EUR][1000 genomes]
rs10981938	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10981939	0.82[EUR][1000 genomes]
rs10981942	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10981943	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10981944	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10981946	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10981947	0.82[EUR][1000 genomes]
rs10981953	0.82[EUR][1000 genomes]
rs10981954	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10981961	0.82[EUR][1000 genomes]
rs10981969	0.82[EUR][1000 genomes]
rs10981970	0.82[EUR][1000 genomes]
rs10981971	0.82[EUR][1000 genomes]
rs10981973	0.82[EUR][1000 genomes]
rs10981974	0.82[EUR][1000 genomes]
rs10981975	0.82[EUR][1000 genomes]
rs10981976	0.82[EUR][1000 genomes]
rs10981980	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10981990	0.80[AFR][1000 genomes]
rs10981992	0.90[ASN][1000 genomes]
rs11536809	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11560574	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12237042	0.82[EUR][1000 genomes]
rs12237457	0.82[EUR][1000 genomes]
rs12683412	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12683629	0.82[EUR][1000 genomes]
rs12683641	0.82[EUR][1000 genomes]
rs13302495	0.82[EUR][1000 genomes]
rs2418255	0.82[EUR][1000 genomes]
rs2900567	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35929232	0.81[AFR][1000 genomes]
rs55742527	0.82[EUR][1000 genomes]
rs57490136	0.82[EUR][1000 genomes]
rs57961249	0.82[EUR][1000 genomes]
rs58226726	0.82[EUR][1000 genomes]
rs58744729	0.82[EUR][1000 genomes]
rs61389135	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7038455	0.82[EUR][1000 genomes]
rs73548564	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116621400-116623600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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