Variant report

Variant	rs11560574
Chromosome Location	chr9:116590929-116590930
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10817522	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10817525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10817526	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10817527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10981927	1.00[EUR][1000 genomes]
rs10981929	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10981933	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10981934	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10981936	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10981937	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10981938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10981939	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10981942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10981943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10981944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10981946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10981947	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10981953	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10981954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10981961	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10981969	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10981970	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10981971	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10981972	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10981973	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10981974	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10981975	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10981976	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10981979	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10981980	1.00[EUR][1000 genomes]
rs10981992	0.89[EUR][1000 genomes]
rs11536809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12237042	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12237457	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12683246	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12683412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12683629	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12683641	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13302495	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2418255	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2900567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55742527	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57490136	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57961249	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58226726	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58744729	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60824015	0.89[ASN][1000 genomes]
rs61389135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7038455	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73548564	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs988015	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116590200-116591000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr9:116590400-116591000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:116590400-116591000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:116590400-116591000	Flanking Active TSS	HUVEC	blood vessel
5	chr9:116590400-116591000	Enhancers	NH-A	brain
6	chr9:116590400-116591000	Active TSS	NHLF	lung
7	chr9:116590600-116591000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:116590600-116591000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr9:116590600-116591000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr9:116590800-116591000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
11	chr9:116590800-116591000	Active TSS	Aorta	Aorta
12	chr9:116590800-116591000	Flanking Active TSS	Osteobl	bone
13	chr9:116590800-116591200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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