Variant report

Variant	rs55742527
Chromosome Location	chr9:116554149-116554150
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116552739..116554280-chr9:116561319..116563761,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10817522	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10817525	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10817526	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10817527	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10981927	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10981929	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10981933	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10981934	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10981936	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10981937	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10981938	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10981939	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10981942	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10981943	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10981944	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10981946	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10981947	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10981953	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10981954	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10981961	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10981969	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10981970	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10981971	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10981972	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10981973	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10981974	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10981975	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10981976	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10981979	0.82[EUR][1000 genomes]
rs10981980	1.00[EUR][1000 genomes]
rs10981992	0.89[EUR][1000 genomes]
rs11536809	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11560574	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12237042	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12237457	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12683246	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12683412	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12683629	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12683641	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13302495	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2418255	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2900567	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57490136	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57961249	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58226726	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58744729	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60824015	0.85[ASN][1000 genomes]
rs61389135	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7038455	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73548564	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs988015	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116551400-116556000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr9:116552000-116555800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links