Variant report

Variant	rs10981934
Chromosome Location	chr9:116565746-116565747
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116559614..116561591-chr9:116563404..116566069,2	K562	blood:
2	chr9:116564524..116566255-chr9:116644451..116646810,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10817522	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10817525	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10817526	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10817527	0.94[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10981927	0.90[EUR][1000 genomes]
rs10981929	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10981933	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10981936	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10981937	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10981938	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10981939	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10981942	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10981943	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10981944	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10981946	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10981947	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10981953	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10981954	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10981961	0.94[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10981969	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10981970	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10981971	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10981972	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10981973	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10981974	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10981975	0.94[CHB][hapmap];0.83[CHD][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10981976	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10981980	0.90[EUR][1000 genomes]
rs10981989	0.90[EUR][1000 genomes]
rs11536809	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11560574	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12237042	0.94[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12237457	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12683246	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12683412	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12683629	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12683641	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13302495	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2418255	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2900567	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55742527	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57490136	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57961249	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58226726	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58744729	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60824015	0.86[ASN][1000 genomes]
rs61389135	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7038455	0.94[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73548564	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs988015	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10981934	NCRNA00256B	cis	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116557800-116569800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:116565600-116565800	Bivalent Enhancer	NHDF-Ad	bronchial
3	chr9:116565600-116566800	Enhancers	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links