Variant report

Variant	rs10981938
Chromosome Location	chr9:116570931-116570932
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116435760..116437445-chr9:116570526..116572083,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10817522	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10817525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10817526	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10817527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10981927	1.00[EUR][1000 genomes]
rs10981929	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10981933	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10981934	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10981936	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10981937	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10981939	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10981942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10981943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10981944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10981946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10981947	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10981953	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10981954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10981961	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10981969	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10981970	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10981971	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10981972	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10981973	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10981974	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10981975	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10981976	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10981979	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10981980	1.00[EUR][1000 genomes]
rs10981992	0.89[EUR][1000 genomes]
rs11536809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11560574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12237042	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12237457	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12683246	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12683412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12683629	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12683641	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13302495	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2418255	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2900567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55742527	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57490136	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57961249	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58226726	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58744729	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60824015	0.86[ASN][1000 genomes]
rs61389135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7038455	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73548564	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs988015	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116569800-116571200	Enhancers	HSMM	muscle
2	chr9:116569800-116571400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:116569800-116571600	Enhancers	K562	blood
4	chr9:116570000-116571000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:116570000-116571200	Enhancers	A549	lung
6	chr9:116570000-116571400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:116570200-116571000	Enhancers	Adipose Nuclei	Adipose
8	chr9:116570200-116571000	Enhancers	Colon Smooth Muscle	Colon
9	chr9:116570200-116571000	Enhancers	NHLF	lung
10	chr9:116570200-116571200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr9:116570200-116571200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:116570200-116571200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr9:116570200-116571200	Enhancers	Fetal Lung	lung
14	chr9:116570200-116571200	Enhancers	Pancreas	Pancrea
15	chr9:116570200-116571200	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr9:116570200-116571200	Enhancers	NHEK	skin
17	chr9:116570200-116571400	Enhancers	Muscle Satellite Cultured Cells	--
18	chr9:116570200-116571400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr9:116570200-116571400	Enhancers	Ovary	ovary
20	chr9:116570200-116571600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:116570200-116571600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:116570200-116571600	Enhancers	NHDF-Ad	bronchial
23	chr9:116570200-116571600	Enhancers	Osteobl	bone
24	chr9:116570400-116571200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr9:116570400-116571400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr9:116570400-116571400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr9:116570400-116571400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr9:116570400-116576800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr9:116570600-116571000	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr9:116570600-116571000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr9:116570600-116571200	Weak transcription	Esophagus	oesophagus
32	chr9:116570600-116571400	Enhancers	HUVEC	blood vessel
33	chr9:116570800-116571000	Enhancers	Gastric	stomach
34	chr9:116570800-116571400	Enhancers	HMEC	breast
35	chr9:116570800-116571400	Enhancers	HSMMtube	muscle
36	chr9:116570800-116571400	Enhancers	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links