Variant report

Variant	rs10232036
Chromosome Location	chr7:33251952-33251953
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10244288	0.82[ASN][1000 genomes]
rs10265926	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10273634	0.89[AMR][1000 genomes]
rs12668888	0.94[AMR][1000 genomes]
rs1420150	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17170170	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17170176	0.93[AMR][1000 genomes]
rs1894872	0.83[ASN][1000 genomes]
rs2110767	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2893467	0.84[ASN][1000 genomes]
rs4720108	0.81[EUR][1000 genomes]
rs58069881	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs60192620	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6944561	0.80[EUR][1000 genomes]
rs73097268	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9791453	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029220	chr7:32921484-33262190	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	nsv830943	chr7:33167106-33352759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33217800-33252400	Weak transcription	Aorta	Aorta
2	chr7:33218200-33252200	Weak transcription	Left Ventricle	heart
3	chr7:33247000-33252200	Weak transcription	Ovary	ovary
4	chr7:33248000-33255400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr7:33249200-33252600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:33249400-33257200	Weak transcription	Fetal Brain Male	brain
7	chr7:33249800-33254600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:33250000-33252400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
9	chr7:33250600-33260400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr7:33251000-33252000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr7:33251000-33255000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:33251200-33252000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:33251200-33252800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
14	chr7:33251400-33252400	ZNF genes & repeats	Fetal Lung	lung
15	chr7:33251400-33253800	Weak transcription	Pancreas	Pancrea
16	chr7:33251400-33265400	Weak transcription	Gastric	stomach
17	chr7:33251600-33252400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
18	chr7:33251600-33254200	Weak transcription	Right Ventricle	heart
19	chr7:33251800-33252000	ZNF genes & repeats	Primary T cells from cord blood	blood
20	chr7:33251800-33252000	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr7:33251800-33254400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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