Variant report

Variant	rs2110767
Chromosome Location	chr7:33277292-33277293
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10232036	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10244288	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs10251272	1.00[CEU][hapmap];0.86[MEX][hapmap];0.92[TSI][hapmap]
rs10253342	1.00[ASW][hapmap];1.00[CEU][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap]
rs10265926	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10268593	1.00[CEU][hapmap]
rs10273634	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[CHD][hapmap];0.95[JPT][hapmap];0.93[MEX][hapmap];0.80[MKK][hapmap];0.92[TSI][hapmap];0.91[AMR][1000 genomes]
rs10486521	1.00[ASW][hapmap];0.84[CEU][hapmap]
rs10486524	0.90[CEU][hapmap]
rs12667345	0.81[EUR][1000 genomes]
rs12668888	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12673354	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[TSI][hapmap]
rs1420149	0.90[CEU][hapmap];0.81[GIH][hapmap]
rs1420150	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17170170	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17170176	0.88[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17394546	0.90[CEU][hapmap]
rs17396229	1.00[ASW][hapmap]
rs17398251	0.84[CEU][hapmap]
rs17473365	1.00[ASW][hapmap];0.84[CEU][hapmap]
rs17475325	0.84[CEU][hapmap]
rs17475728	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[LWK][hapmap];0.86[MEX][hapmap];0.80[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs17476738	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[TSI][hapmap]
rs1894872	0.95[CHB][hapmap];0.86[CHD][hapmap]
rs2216031	0.81[CHB][hapmap]
rs2893467	0.95[CHB][hapmap]
rs4442031	0.87[YRI][hapmap]
rs4720108	0.90[CEU][hapmap];0.90[CHB][hapmap]
rs58069881	0.90[EUR][1000 genomes]
rs60192620	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73097268	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73097281	0.81[EUR][1000 genomes]
rs7793096	0.81[CHB][hapmap];0.83[CHD][hapmap]
rs9791453	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830943	chr7:33167106-33352759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2110767	NPSR1	cis	parietal	SCAN
rs2110767	CRHR2	cis	cerebellum	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33273800-33283800	Weak transcription	Fetal Lung	lung
2	chr7:33276800-33277400	Enhancers	HUVEC	blood vessel
3	chr7:33276800-33277600	Enhancers	Brain Hippocampus Middle	brain
4	chr7:33276800-33277600	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr7:33276800-33277800	Enhancers	Brain Anterior Caudate	brain
6	chr7:33276800-33277800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr7:33276800-33277800	Enhancers	Brain Substantia Nigra	brain
8	chr7:33277000-33277400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr7:33277000-33277400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr7:33277000-33277800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr7:33277000-33277800	Enhancers	Liver	Liver
12	chr7:33277000-33278000	Enhancers	HepG2	liver
13	chr7:33277200-33277800	Enhancers	Brain Cingulate Gyrus	brain
14	chr7:33277200-33281800	Weak transcription	Stomach Mucosa	stomach
15	chr7:33277200-33282800	Weak transcription	Brain Angular Gyrus	brain

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