Variant report
| Variant | rs17475325 |
|---|---|
| Chromosome Location | chr7:33282134-33282135 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10251272 | 0.84[CEU][hapmap] |
| rs10253342 | 0.84[CEU][hapmap] |
| rs10268593 | 0.85[CEU][hapmap] |
| rs10273634 | 0.84[CEU][hapmap] |
| rs10486521 | 1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs12668888 | 0.85[CEU][hapmap] |
| rs12673354 | 0.84[CEU][hapmap] |
| rs1420150 | 0.85[CEU][hapmap] |
| rs17170176 | 0.82[CEU][hapmap] |
| rs17396229 | 0.94[CEU][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs17398251 | 1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs17398949 | 0.83[CEU][hapmap] |
| rs17473365 | 1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs17475728 | 0.84[CEU][hapmap] |
| rs17476738 | 0.84[CEU][hapmap] |
| rs17786463 | 0.83[CEU][hapmap] |
| rs2109525 | 0.83[CEU][hapmap] |
| rs2110767 | 0.84[CEU][hapmap] |
| rs73095309 | 0.82[EUR][1000 genomes] |
| rs73095326 | 0.80[EUR][1000 genomes] |
| rs73095361 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs73095378 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs73097241 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs73097258 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs73097292 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs73099226 | 0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs73099251 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs73101663 | 0.82[AFR][1000 genomes] |
| rs73101665 | 0.82[AFR][1000 genomes] |
| rs73101668 | 0.82[AFR][1000 genomes] |
| rs7779232 | 0.83[CEU][hapmap] |
| rs7793719 | 0.83[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830943 | chr7:33167106-33352759 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv606610 | chr7:33218763-33486316 | Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv1016416 | chr7:33241443-33559477 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv916660 | chr7:33272493-33506384 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:33273800-33283800 | Weak transcription | Fetal Lung | lung |
| 2 | chr7:33277200-33282800 | Weak transcription | Brain Angular Gyrus | brain |
