Variant report

Variant	rs17786463
Chromosome Location	chr7:33432951-33432952
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10486521	0.83[CEU][hapmap];1.00[YRI][hapmap]
rs1419900	1.00[YRI][hapmap]
rs17396229	1.00[YRI][hapmap]
rs17398251	0.83[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs17398949	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17475325	0.83[CEU][hapmap]
rs1833139	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2109525	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2893469	1.00[YRI][hapmap]
rs41323949	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4141012	1.00[YRI][hapmap]
rs56268815	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60418513	0.84[EUR][1000 genomes]
rs61706828	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs721851	1.00[YRI][hapmap]
rs726463	1.00[YRI][hapmap]
rs726464	1.00[YRI][hapmap]
rs73099226	0.82[AFR][1000 genomes]
rs73099251	0.82[AFR][1000 genomes]
rs73099260	0.82[EUR][1000 genomes]
rs73099265	0.83[EUR][1000 genomes]
rs73101663	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73101665	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73101668	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73101671	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73101690	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73101699	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73103504	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73103508	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73103514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73103533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73103557	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7779232	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7793719	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7804723	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv830944	chr7:33389892-33549882	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33389000-33437400	Weak transcription	Liver	Liver
2	chr7:33403400-33437800	Weak transcription	Brain Substantia Nigra	brain
3	chr7:33404000-33433000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:33408200-33434600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr7:33408600-33434400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:33412200-33433200	Weak transcription	Psoas Muscle	Psoas
7	chr7:33418000-33438600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr7:33418200-33436400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr7:33418600-33434800	Weak transcription	Fetal Kidney	kidney
10	chr7:33419000-33436800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr7:33420000-33433200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr7:33420000-33435000	Weak transcription	Brain Anterior Caudate	brain
13	chr7:33420400-33435000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr7:33420400-33436400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr7:33420400-33444600	Weak transcription	Left Ventricle	heart
16	chr7:33420600-33433200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr7:33420600-33435000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr7:33420600-33435200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr7:33420600-33437800	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr7:33420600-33449200	Weak transcription	Ovary	ovary
21	chr7:33420800-33434600	Weak transcription	Fetal Muscle Leg	muscle
22	chr7:33420800-33435000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr7:33420800-33435000	Weak transcription	Fetal Lung	lung
24	chr7:33420800-33437400	Weak transcription	Fetal Intestine Large	intestine
25	chr7:33420800-33437800	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr7:33421000-33439800	Weak transcription	Fetal Stomach	stomach
27	chr7:33421000-33442600	Weak transcription	Pancreas	Pancrea
28	chr7:33422200-33452200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr7:33422600-33437800	Weak transcription	Brain Angular Gyrus	brain
30	chr7:33424200-33435000	Weak transcription	Primary T cells from cord blood	blood
31	chr7:33424800-33434800	Weak transcription	Primary B cells from peripheral blood	blood
32	chr7:33425200-33435000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr7:33428200-33435200	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr7:33428200-33436200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr7:33428200-33438200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr7:33428200-33458000	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr7:33428600-33435000	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr7:33429800-33433600	Weak transcription	Adipose Nuclei	Adipose

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