Variant report

Variant	rs1833139
Chromosome Location	chr7:33535908-33535909
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:33535469..33537729-chr7:33538223..33540733,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17398949	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17786463	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2109525	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs41323949	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56268815	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61706828	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73101663	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73101665	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73101668	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73101671	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73101690	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73101699	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73103504	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73103508	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73103514	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73103533	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73103557	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7779232	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830944	chr7:33389892-33549882	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv933237	chr7:33470390-33574046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv933018	chr7:33506325-33707270	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv830945	chr7:33526648-33670592	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33533600-33536000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:33533800-33540000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:33533800-33543800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:33534200-33552400	Weak transcription	Pancreas	Pancrea
5	chr7:33534400-33537800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:33535000-33536800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr7:33535000-33537000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr7:33535000-33540000	Weak transcription	Left Ventricle	heart
9	chr7:33535000-33540200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:33535000-33541000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr7:33535200-33536200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr7:33535200-33536600	Weak transcription	Aorta	Aorta
13	chr7:33535200-33536800	Weak transcription	Fetal Muscle Leg	muscle
14	chr7:33535200-33538800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr7:33535200-33540000	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr7:33535200-33542000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr7:33535400-33537600	Enhancers	Osteobl	bone
18	chr7:33535400-33540000	Weak transcription	HSMM	muscle
19	chr7:33535400-33540000	Weak transcription	NHDF-Ad	bronchial
20	chr7:33535400-33540200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr7:33535400-33540200	Weak transcription	Fetal Heart	heart
22	chr7:33535400-33540400	Weak transcription	Colon Smooth Muscle	Colon
23	chr7:33535400-33547200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr7:33535600-33537400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr7:33535800-33536600	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr7:33535800-33540000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr7:33535800-33540000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr7:33535800-33540000	Weak transcription	HSMMtube	muscle

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