Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:33438887..33440911-chr7:33449255..33451707,2	K562	blood:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17398251	0.82[AFR][1000 genomes]
rs17398949	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17786463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1833139	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2109525	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs41323949	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56268815	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs60418513	0.83[EUR][1000 genomes]
rs61706828	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73099226	0.82[AFR][1000 genomes]
rs73099251	0.82[AFR][1000 genomes]
rs73099260	0.81[EUR][1000 genomes]
rs73099265	0.82[EUR][1000 genomes]
rs73101663	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73101665	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73101668	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73101671	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73101690	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73101699	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73103504	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73103508	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73103533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73103557	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7779232	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7793719	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv830944	chr7:33389892-33549882	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33422200-33452200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr7:33428200-33458000	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr7:33448200-33457600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:33449000-33457400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr7:33451000-33457800	Weak transcription	H9 Cell Line	embryonic stem cell

Quick Search: