Variant report

Variant	rs73101663
Chromosome Location	chr7:33392988-33392989
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs17398251	1.00[AFR][1000 genomes]
rs17398949	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17475325	0.82[AFR][1000 genomes]
rs17786463	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1833139	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2109525	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs41323949	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56268815	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60418513	0.87[EUR][1000 genomes]
rs61706828	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73097241	0.82[AFR][1000 genomes]
rs73097258	0.82[AFR][1000 genomes]
rs73097292	0.82[AFR][1000 genomes]
rs73099226	1.00[AFR][1000 genomes]
rs73099251	1.00[AFR][1000 genomes]
rs73099260	0.85[EUR][1000 genomes]
rs73099265	0.88[EUR][1000 genomes]
rs73101665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73101668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73101671	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73101690	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73101699	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73103504	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73103508	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73103514	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73103533	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73103557	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7779232	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7793719	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv830944	chr7:33389892-33549882	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33355200-33419600	Weak transcription	Primary T cells from cord blood	blood
2	chr7:33362200-33404400	Weak transcription	Ovary	ovary
3	chr7:33362200-33404800	Weak transcription	Fetal Lung	lung
4	chr7:33370600-33396200	Weak transcription	Adipose Nuclei	Adipose
5	chr7:33375800-33399200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr7:33377600-33404800	Weak transcription	Left Ventricle	heart
7	chr7:33378200-33404400	Weak transcription	Aorta	Aorta
8	chr7:33380000-33404400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr7:33380200-33393800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr7:33380400-33393200	Weak transcription	Primary B cells from cord blood	blood
11	chr7:33380400-33393400	Weak transcription	Fetal Stomach	stomach
12	chr7:33380600-33404800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr7:33381400-33407200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr7:33384000-33425400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr7:33384200-33395800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr7:33385800-33407000	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr7:33386000-33394000	Weak transcription	Fetal Kidney	kidney
18	chr7:33386000-33407400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr7:33386400-33408200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr7:33386600-33393200	Weak transcription	Psoas Muscle	Psoas
21	chr7:33387000-33425200	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr7:33388800-33404800	Weak transcription	Lung	lung
23	chr7:33389000-33437400	Weak transcription	Liver	Liver
24	chr7:33390800-33394600	Weak transcription	Colon Smooth Muscle	Colon
25	chr7:33391200-33397400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr7:33391400-33394000	Active TSS	H9 Cell Line	embryonic stem cell
27	chr7:33391400-33395400	Active TSS	HUES6 Cell Line	embryonic stem cell
28	chr7:33391400-33396600	Active TSS	ES-I3 Cell Line	embryonic stem cell
29	chr7:33391600-33393000	Active TSS	HUES64 Cell Line	embryonic stem cell
30	chr7:33391600-33393200	Active TSS	iPS-20b Cell Line	embryonic stem cell
31	chr7:33391600-33407400	Weak transcription	Primary hematopoietic stem cells	blood
32	chr7:33391800-33394600	Active TSS	iPS-15b Cell Line	embryonic stem cell
33	chr7:33392000-33394200	Active TSS	HUES48 Cell Line	embryonic stem cell
34	chr7:33392400-33393000	Active TSS	iPS-18 Cell Line	embryonic stem cell
35	chr7:33392600-33393200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr7:33392600-33423000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr7:33392800-33393200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
38	chr7:33392800-33393200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links