Variant report

Variant	rs17398949
Chromosome Location	chr7:33379807-33379808
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10486521	0.82[CEU][hapmap]
rs17398251	0.83[CEU][hapmap]
rs17473365	0.82[CEU][hapmap]
rs17475325	0.83[CEU][hapmap]
rs17786463	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1833139	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2109525	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs41323949	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56268815	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60418513	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61706828	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73099260	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73099265	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73101663	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73101665	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73101668	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73101671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73101690	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73101699	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73103504	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73103508	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73103514	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73103533	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73103557	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7779232	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7793719	1.00[CEU][hapmap];0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7801765	0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33355200-33419600	Weak transcription	Primary T cells from cord blood	blood
2	chr7:33362200-33404400	Weak transcription	Ovary	ovary
3	chr7:33362200-33404800	Weak transcription	Fetal Lung	lung
4	chr7:33366600-33384000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:33370600-33396200	Weak transcription	Adipose Nuclei	Adipose
6	chr7:33375200-33380600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr7:33375800-33399200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr7:33377400-33384600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr7:33377600-33404800	Weak transcription	Left Ventricle	heart
10	chr7:33377800-33392600	Weak transcription	Primary B cells from peripheral blood	blood
11	chr7:33378000-33392800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr7:33378200-33404400	Weak transcription	Aorta	Aorta
13	chr7:33379000-33381200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr7:33379400-33389400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr7:33379600-33385200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:33379600-33391800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr7:33379800-33388800	Weak transcription	Colon Smooth Muscle	Colon

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