Variant report

Variant	rs61706828
Chromosome Location	chr7:33383331-33383332
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:33381826..33383987-chr7:33388092..33389898,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17398949	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17786463	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1833139	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2109525	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs41323949	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56268815	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60418513	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73099260	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73099265	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73101663	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73101665	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73101668	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73101671	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73101690	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73101699	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73103504	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73103508	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73103514	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73103533	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73103557	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7779232	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7793719	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33355200-33419600	Weak transcription	Primary T cells from cord blood	blood
2	chr7:33362200-33404400	Weak transcription	Ovary	ovary
3	chr7:33362200-33404800	Weak transcription	Fetal Lung	lung
4	chr7:33366600-33384000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:33370600-33396200	Weak transcription	Adipose Nuclei	Adipose
6	chr7:33375800-33399200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr7:33377400-33384600	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr7:33377600-33404800	Weak transcription	Left Ventricle	heart
9	chr7:33377800-33392600	Weak transcription	Primary B cells from peripheral blood	blood
10	chr7:33378000-33392800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr7:33378200-33404400	Weak transcription	Aorta	Aorta
12	chr7:33379400-33389400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr7:33379600-33385200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:33379600-33391800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr7:33379800-33388800	Weak transcription	Colon Smooth Muscle	Colon
16	chr7:33380000-33404400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr7:33380200-33393800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr7:33380400-33393200	Weak transcription	Primary B cells from cord blood	blood
19	chr7:33380400-33393400	Weak transcription	Fetal Stomach	stomach
20	chr7:33380600-33404800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr7:33381400-33407200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr7:33381800-33383600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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