Variant report

Variant	rs10273634
Chromosome Location	chr7:33351629-33351630
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10232036	0.89[AMR][1000 genomes]
rs1024805	0.85[CHB][hapmap]
rs10251272	1.00[CEU][hapmap];0.90[GIH][hapmap];0.80[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs10253342	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];0.92[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10265926	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10268593	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes]
rs10486521	1.00[ASW][hapmap];0.84[CEU][hapmap]
rs10486524	0.90[CEU][hapmap]
rs10951388	0.80[JPT][hapmap]
rs12667345	0.81[EUR][1000 genomes]
rs12668888	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12673354	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[GIH][hapmap];0.86[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs1420149	0.90[CEU][hapmap]
rs1420150	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17170170	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17170176	0.88[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17394546	0.90[CEU][hapmap]
rs17396229	1.00[ASW][hapmap]
rs17398251	0.84[CEU][hapmap]
rs17473365	1.00[ASW][hapmap];0.84[CEU][hapmap]
rs17475325	0.84[CEU][hapmap]
rs17475728	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[GIH][hapmap];0.80[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs17476738	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[GIH][hapmap];0.85[LWK][hapmap];0.86[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes]
rs1894872	0.88[CHD][hapmap]
rs2110767	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[CHD][hapmap];0.95[JPT][hapmap];0.93[MEX][hapmap];0.80[MKK][hapmap];0.92[TSI][hapmap];0.91[AMR][1000 genomes]
rs2216031	0.91[CHB][hapmap];0.83[ASN][1000 genomes]
rs28560342	0.85[EUR][1000 genomes]
rs4442031	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs4720108	0.90[CEU][hapmap]
rs60192620	0.91[AMR][1000 genomes]
rs73097281	0.81[EUR][1000 genomes]
rs7793096	0.91[CHB][hapmap];0.88[CHD][hapmap]
rs9791453	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830943	chr7:33167106-33352759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv887925	chr7:33304218-33361323	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3398087	chr7:33339761-33355341	Enhancers ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10273634	CRHR2	cis	cerebellum	SCAN
rs10273634	NPSR1	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33328000-33354600	Weak transcription	Ovary	ovary
2	chr7:33334200-33357200	Weak transcription	Gastric	stomach
3	chr7:33340000-33354400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr7:33340000-33358600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr7:33343200-33361600	Weak transcription	Brain Angular Gyrus	brain
6	chr7:33344200-33355200	Weak transcription	Lung	lung
7	chr7:33344200-33359000	Weak transcription	Spleen	Spleen
8	chr7:33347400-33354600	Weak transcription	Aorta	Aorta
9	chr7:33350400-33356000	Weak transcription	Fetal Muscle Leg	muscle
10	chr7:33350600-33353000	Weak transcription	Fetal Lung	lung

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