Variant report

Variant	rs10486524
Chromosome Location	chr7:33242474-33242475
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10251272	0.90[CEU][hapmap];0.96[CHD][hapmap];0.80[MEX][hapmap]
rs10253342	0.90[CEU][hapmap];0.96[CHD][hapmap]
rs10268593	0.95[CEU][hapmap]
rs10273634	0.90[CEU][hapmap]
rs1076462	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11525807	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11526177	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12668888	0.90[CEU][hapmap]
rs12673354	0.90[CEU][hapmap];0.96[CHD][hapmap];0.86[MEX][hapmap]
rs1420149	0.87[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.81[CHD][hapmap];0.95[GIH][hapmap];0.91[LWK][hapmap];0.94[MEX][hapmap];0.90[MKK][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes]
rs1420150	0.90[CEU][hapmap]
rs17394546	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17395534	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17395966	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17475728	0.90[CEU][hapmap];0.96[CHD][hapmap];0.80[MEX][hapmap]
rs17476738	0.90[CEU][hapmap];0.91[CHD][hapmap];0.86[MEX][hapmap]
rs2110767	0.90[CEU][hapmap]
rs4720108	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs55692505	0.90[EUR][1000 genomes]
rs56836900	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58069881	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59056279	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60310820	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61007212	0.90[EUR][1000 genomes]
rs6944561	0.85[EUR][1000 genomes]
rs6944964	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6974247	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73095385	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73097268	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73097281	0.81[AMR][1000 genomes]
rs7792350	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7806498	0.83[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029220	chr7:32921484-33262190	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	nsv830942	chr7:33048075-33246735	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv830943	chr7:33167106-33352759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv1796696	chr7:33236199-33243642	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv521481	chr7:33242474-33245128	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10486524	CRHR2	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33217800-33252400	Weak transcription	Aorta	Aorta
2	chr7:33218200-33252200	Weak transcription	Left Ventricle	heart
3	chr7:33230800-33248000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:33236400-33244400	Weak transcription	Fetal Muscle Leg	muscle
5	chr7:33236400-33247800	Weak transcription	Fetal Heart	heart
6	chr7:33236800-33249200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:33239800-33242600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:33240600-33249800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr7:33241200-33243200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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