Variant report

Variant	rs12668888
Chromosome Location	chr7:33334407-33334408
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10232036	0.94[AMR][1000 genomes]
rs10244288	0.81[CHB][hapmap]
rs1024805	0.91[CHB][hapmap]
rs10251272	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10253342	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10265926	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10268593	1.00[CEU][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10273634	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10486521	0.84[CEU][hapmap]
rs10486524	0.90[CEU][hapmap]
rs10951388	0.81[JPT][hapmap]
rs12667345	0.82[EUR][1000 genomes]
rs12673354	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes]
rs1420149	0.90[CEU][hapmap]
rs1420150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17170170	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17170176	0.88[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17394546	0.86[CEU][hapmap]
rs17398251	0.85[CEU][hapmap]
rs17473365	0.84[CEU][hapmap]
rs17475325	0.85[CEU][hapmap]
rs17475728	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17476738	1.00[CEU][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1894872	0.81[CHB][hapmap]
rs2110767	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2216031	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs28560342	0.86[EUR][1000 genomes]
rs2893467	0.81[CHB][hapmap]
rs4442031	0.86[CHB][hapmap];0.80[JPT][hapmap]
rs4720108	0.86[CEU][hapmap]
rs60192620	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73097281	0.82[EUR][1000 genomes]
rs7793096	0.95[CHB][hapmap]
rs9791453	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830943	chr7:33167106-33352759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv1792546	chr7:33304218-33346932	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv887925	chr7:33304218-33361323	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33317000-33347600	Weak transcription	Pancreas	Pancrea
2	chr7:33318600-33339600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr7:33328000-33339600	Weak transcription	Left Ventricle	heart
4	chr7:33328000-33354600	Weak transcription	Ovary	ovary
5	chr7:33328200-33339600	Weak transcription	Fetal Lung	lung
6	chr7:33329800-33339400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr7:33334200-33357200	Weak transcription	Gastric	stomach

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