Variant report

Variant	rs10233479
Chromosome Location	chr7:150933044-150933045
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:150931861-150933172	GM12878	blood:	n/a	n/a
2	POLR2A	chr7:150932336-150940594	K562	blood:	n/a	n/a
3	POLR2A	chr7:150932457-150941238	U87	brain:	n/a	n/a
4	POLR2A	chr7:150932480-150933148	GM12891	blood:	n/a	n/a
5	POLR2A	chr7:150933017-150933855	IMR90	lung:	n/a	n/a
6	POLR2A	chr7:150932759-150933182	PFSK-1	brain:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:150776319..150779502-chr7:150929825..150933736,3	K562	blood:
2	chr7:150930547..150933438-chr7:151037429..151040414,2	MCF-7	breast:
3	chr7:150910425..150912295-chr7:150932793..150934367,2	MCF-7	breast:
4	chr7:150932407..150934552-chr7:151037359..151040324,2	K562	blood:
5	chr7:150775206..150778180-chr7:150932374..150934759,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000272661	TF binding region
MIR671	TF binding region
ENSG00000013374	Chromatin interaction
ENSG00000164896	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1122979	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61591132	0.95[EUR][1000 genomes]
rs73169642	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73169649	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73169650	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73169651	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73169652	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73169654	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73169662	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73169668	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73169671	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73169672	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73169674	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73169678	0.95[EUR][1000 genomes]
rs73169679	0.90[EUR][1000 genomes]
rs7781265	0.95[EUR][1000 genomes]
rs7782699	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7812088	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
2	nsv889476	chr7:150729212-150951819	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	120 gene(s)	inside rSNPs	diseases
3	nsv609035	chr7:150896223-150955765	Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv889487	chr7:150922952-150988172	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
5	nsv889488	chr7:150926775-150955765	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150930600-150940000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:150930800-150934000	Genic enhancers	Fetal Muscle Trunk	muscle
3	chr7:150931000-150933600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr7:150931000-150933800	Weak transcription	Colon Smooth Muscle	Colon
5	chr7:150931000-150944600	Weak transcription	Fetal Kidney	kidney
6	chr7:150931200-150933800	Weak transcription	Fetal Lung	lung
7	chr7:150931200-150935600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:150931200-150936200	Genic enhancers	Skeletal Muscle Male	skeletal muscle
9	chr7:150931200-150936400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr7:150931200-150937400	Weak transcription	Right Atrium	heart
11	chr7:150931200-150938200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:150931200-150940000	Strong transcription	Fetal Intestine Small	intestine
13	chr7:150931200-150940000	Weak transcription	Stomach Mucosa	stomach
14	chr7:150931200-150940200	Strong transcription	Fetal Stomach	stomach
15	chr7:150931400-150933400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr7:150931400-150933400	Strong transcription	Skeletal Muscle Female	skeletal muscle
17	chr7:150931400-150933400	Genic enhancers	HSMM	muscle
18	chr7:150931400-150933400	Weak transcription	HSMMtube	muscle
19	chr7:150931400-150933600	Strong transcription	Fetal Muscle Leg	muscle
20	chr7:150931400-150933800	Weak transcription	Brain Angular Gyrus	brain
21	chr7:150931400-150934200	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr7:150931400-150935200	Strong transcription	Primary T cells from cord blood	blood
23	chr7:150931400-150935400	Strong transcription	NHEK	skin
24	chr7:150931400-150936600	Weak transcription	Fetal Heart	heart
25	chr7:150931400-150936800	Strong transcription	A549	lung
26	chr7:150931400-150937400	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr7:150931400-150937400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr7:150931400-150939000	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr7:150931400-150939600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr7:150931400-150939800	Strong transcription	Lung	lung
31	chr7:150931400-150940200	Weak transcription	Small Intestine	intestine
32	chr7:150931400-150940200	Strong transcription	NHLF	lung
33	chr7:150931600-150937200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr7:150931600-150937400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr7:150931600-150937800	Strong transcription	Thymus	Thymus
36	chr7:150931600-150939200	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr7:150931600-150939200	Strong transcription	Brain Hippocampus Middle	brain
38	chr7:150931600-150939200	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr7:150931600-150939600	Strong transcription	Placenta	Placenta
40	chr7:150931600-150939800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr7:150931600-150939800	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr7:150931600-150940000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr7:150931600-150940200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr7:150931600-150940200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr7:150931600-150940800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr7:150931600-150944400	Weak transcription	Hela-S3	cervix
47	chr7:150931800-150933600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr7:150931800-150934600	Strong transcription	Primary B cells from peripheral blood	blood
49	chr7:150931800-150935800	Strong transcription	HUES48 Cell Line	embryonic stem cell
50	chr7:150931800-150937000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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