Variant report

Variant	rs73169662
Chromosome Location	chr7:150922306-150922307
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10233479	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1122979	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61591132	0.88[EUR][1000 genomes]
rs73169642	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73169649	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73169650	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73169651	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73169652	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73169654	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73169668	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73169671	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73169672	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73169674	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73169678	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73169679	0.83[EUR][1000 genomes]
rs7781265	0.88[EUR][1000 genomes]
rs7782699	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7812088	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
2	nsv889476	chr7:150729212-150951819	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	120 gene(s)	inside rSNPs	diseases
3	nsv609035	chr7:150896223-150955765	Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150907600-150922600	Strong transcription	Skeletal Muscle Male	skeletal muscle
2	chr7:150908000-150922600	Strong transcription	Brain Cingulate Gyrus	brain
3	chr7:150908000-150922800	Strong transcription	Brain Hippocampus Middle	brain
4	chr7:150908200-150922600	Strong transcription	Primary T cells from cord blood	blood
5	chr7:150908400-150923200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr7:150908600-150922400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:150908600-150922400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr7:150908800-150922400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr7:150908800-150922400	Strong transcription	Fetal Intestine Small	intestine
10	chr7:150908800-150922600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr7:150908800-150922600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr7:150908800-150922800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr7:150908800-150923000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:150908800-150923000	Strong transcription	Fetal Muscle Trunk	muscle
15	chr7:150909000-150922400	Strong transcription	Duodenum Smooth Muscle	Duodenum
16	chr7:150909000-150922600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr7:150909000-150923000	Strong transcription	Fetal Muscle Leg	muscle
18	chr7:150909200-150922400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr7:150909200-150922400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr7:150909200-150922400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr7:150909200-150922400	Strong transcription	Stomach Smooth Muscle	stomach
22	chr7:150909200-150922400	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr7:150909200-150922600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr7:150909200-150922600	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr7:150909200-150922600	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr7:150909200-150922600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr7:150909200-150922600	Strong transcription	K562	blood
28	chr7:150909200-150922800	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr7:150909200-150922800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
30	chr7:150909200-150922800	Strong transcription	Fetal Stomach	stomach
31	chr7:150909200-150923000	Strong transcription	Cortex derived primary cultured neurospheres	brain
32	chr7:150909400-150922400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr7:150909400-150922400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr7:150909400-150922400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr7:150909400-150922800	Strong transcription	Brain Anterior Caudate	brain
36	chr7:150909400-150923000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr7:150909600-150922400	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr7:150909600-150922400	Strong transcription	Adipose Nuclei	Adipose
39	chr7:150909600-150922400	Strong transcription	Liver	Liver
40	chr7:150909600-150922400	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr7:150909600-150922400	Strong transcription	Spleen	Spleen
42	chr7:150909600-150922600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr7:150909600-150922600	Strong transcription	Osteobl	bone
44	chr7:150909600-150922800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr7:150909600-150922800	Strong transcription	NHLF	lung
46	chr7:150909800-150922400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr7:150909800-150922400	Strong transcription	Sigmoid Colon	Sigmoid Colon
48	chr7:150909800-150922600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr7:150909800-150922600	Strong transcription	HMEC	breast
50	chr7:150910000-150922600	Strong transcription	Muscle Satellite Cultured Cells	--

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