Variant report

Variant	rs73169652
Chromosome Location	chr7:150909049-150909050
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:150900947..150904902-chr7:150906819..150911270,6	MCF-7	breast:
2	chr7:150888866..150891539-chr7:150907679..150909956,2	K562	blood:
3	chr7:150908780..150913504-chr7:150916695..150920010,4	MCF-7	breast:
4	chr7:150756323..150758655-chr7:150909019..150911809,2	K562	blood:
5	chr7:150905577..150911406-chr7:150912646..150916801,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164889	Chromatin interaction
ENSG00000033050	Chromatin interaction
ENSG00000183016	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10233479	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1122979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61591132	0.87[EUR][1000 genomes]
rs73169642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73169649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73169650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73169651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73169654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73169662	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73169668	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73169671	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73169672	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73169674	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73169678	0.87[EUR][1000 genomes]
rs73169679	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7781265	0.87[EUR][1000 genomes]
rs7782699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7812088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
2	nsv889476	chr7:150729212-150951819	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	120 gene(s)	inside rSNPs	diseases
3	nsv831188	chr7:150735204-150912875	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
4	nsv609035	chr7:150896223-150955765	Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150885000-150910000	Weak transcription	Right Atrium	heart
2	chr7:150899000-150909600	Weak transcription	Aorta	Aorta
3	chr7:150901800-150910000	Weak transcription	Ovary	ovary
4	chr7:150902000-150910200	Weak transcription	Right Ventricle	heart
5	chr7:150902000-150910400	Weak transcription	Pancreas	Pancrea
6	chr7:150903200-150909600	Weak transcription	Spleen	Spleen
7	chr7:150904400-150909600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:150904600-150909600	Weak transcription	Psoas Muscle	Psoas
9	chr7:150904600-150909600	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr7:150904800-150909200	Weak transcription	GM12878-XiMat	blood
11	chr7:150904800-150909400	Weak transcription	Fetal Thymus	thymus
12	chr7:150905000-150910000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr7:150905000-150910000	Weak transcription	Esophagus	oesophagus
14	chr7:150905000-150910800	Weak transcription	Colonic Mucosa	Colon
15	chr7:150905200-150909200	Weak transcription	K562	blood
16	chr7:150905200-150909600	Weak transcription	Gastric	stomach
17	chr7:150905200-150910000	Weak transcription	Primary B cells from peripheral blood	blood
18	chr7:150905200-150910200	Weak transcription	A549	lung
19	chr7:150905400-150909400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr7:150905400-150909600	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr7:150905400-150912000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr7:150905400-150912000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr7:150905600-150909200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr7:150905600-150910000	Weak transcription	Brain Germinal Matrix	brain
25	chr7:150905600-150910000	Weak transcription	Duodenum Mucosa	Duodenum
26	chr7:150905600-150911600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr7:150905800-150909200	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr7:150905800-150909200	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr7:150905800-150909800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr7:150905800-150909800	Weak transcription	HMEC	breast
31	chr7:150905800-150910200	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr7:150905800-150910200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr7:150905800-150910200	Weak transcription	HepG2	liver
34	chr7:150905800-150910800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr7:150906000-150909200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr7:150906000-150909200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr7:150906000-150909400	Weak transcription	Fetal Brain Female	brain
38	chr7:150906000-150909600	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr7:150906000-150909600	Weak transcription	NHLF	lung
40	chr7:150906000-150910800	Weak transcription	NHDF-Ad	bronchial
41	chr7:150906000-150911200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr7:150906000-150911800	Weak transcription	Fetal Lung	lung
43	chr7:150906200-150909200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr7:150906400-150909400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr7:150906400-150909400	Weak transcription	Brain Anterior Caudate	brain
46	chr7:150906400-150910600	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr7:150906600-150909200	Weak transcription	Brain Substantia Nigra	brain
48	chr7:150906600-150909400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr7:150906600-150910000	Weak transcription	Primary hematopoietic stem cells	blood
50	chr7:150906600-150910800	Weak transcription	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links