Variant report

Variant	rs73169671
Chromosome Location	chr7:150947689-150947690
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:150938276..150940538-chr7:150946762..150948405,2	MCF-7	breast:
2	chr7:150928662..150932139-chr7:150946772..150952684,6	MCF-7	breast:
3	chr7:150863343..150865061-chr7:150947610..150949922,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033100	Chromatin interaction
ENSG00000082014	Chromatin interaction
ENSG00000164900	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10233479	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1122979	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61591132	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73169642	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73169649	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73169650	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73169651	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73169652	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73169654	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73169662	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73169668	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73169672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73169674	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73169678	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73169679	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7781265	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7782699	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7812088	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
2	nsv889476	chr7:150729212-150951819	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	120 gene(s)	inside rSNPs	diseases
3	nsv609035	chr7:150896223-150955765	Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv889487	chr7:150922952-150988172	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
5	nsv889488	chr7:150926775-150955765	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150946000-150948800	Flanking Active TSS	Stomach Smooth Muscle	stomach
2	chr7:150946200-150948400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr7:150946200-150948600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
4	chr7:150946400-150948400	Flanking Active TSS	Fetal Brain Female	brain
5	chr7:150946400-150948600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:150946400-150948800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
7	chr7:150946600-150948000	Enhancers	Placenta	Placenta
8	chr7:150946600-150948200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr7:150946600-150948200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:150946600-150948200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
11	chr7:150946600-150948200	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr7:150946600-150948200	Enhancers	NHDF-Ad	bronchial
13	chr7:150946600-150948200	Enhancers	NHLF	lung
14	chr7:150946600-150948400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr7:150946600-150948400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr7:150946600-150948400	Enhancers	Brain Substantia Nigra	brain
17	chr7:150946600-150948400	Enhancers	Esophagus	oesophagus
18	chr7:150946600-150948400	Enhancers	Lung	lung
19	chr7:150946600-150948400	Weak transcription	HUVEC	blood vessel
20	chr7:150946600-150948400	Enhancers	NH-A	brain
21	chr7:150946600-150948600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:150946600-150948600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr7:150946600-150948600	Enhancers	Gastric	stomach
24	chr7:150946600-150948600	Enhancers	Spleen	Spleen
25	chr7:150946600-150949200	Bivalent Enhancer	Fetal Thymus	thymus
26	chr7:150946800-150947800	Enhancers	Brain Angular Gyrus	brain
27	chr7:150946800-150948000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
28	chr7:150946800-150948200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
29	chr7:150946800-150948200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
30	chr7:150946800-150948200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr7:150946800-150948200	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr7:150946800-150948200	Enhancers	Muscle Satellite Cultured Cells	--
33	chr7:150946800-150948200	Enhancers	Brain Anterior Caudate	brain
34	chr7:150946800-150948200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr7:150946800-150948200	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr7:150946800-150948200	Enhancers	Left Ventricle	heart
37	chr7:150946800-150948200	Enhancers	Ovary	ovary
38	chr7:150946800-150948400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
39	chr7:150946800-150948400	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
40	chr7:150946800-150948400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
41	chr7:150946800-150948400	Enhancers	A549	lung
42	chr7:150946800-150948400	Weak transcription	HMEC	breast
43	chr7:150946800-150948600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr7:150947000-150947800	Enhancers	Brain Hippocampus Middle	brain
45	chr7:150947000-150947800	Enhancers	Right Ventricle	heart
46	chr7:150947000-150948000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr7:150947000-150948000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr7:150947000-150948200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
49	chr7:150947000-150948200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr7:150947000-150948200	Enhancers	Brain Germinal Matrix	brain

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