Variant report

Variant	rs10235693
Chromosome Location	chr7:102986098-102986099
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:102936363..102940498-chr7:102983696..102986201,5	K562	blood:
2	chr7:102985801..102988049-chr7:103030466..103032133,2	K562	blood:
3	chr7:102967942..102969803-chr7:102985460..102987931,2	MCF-7	breast:
4	chr7:102937260..102939405-chr7:102983367..102989226,6	MCF-7	breast:
5	chr7:102983625..102990524-chr7:102994295..102998538,7	MCF-7	breast:
6	chr7:102937219..102940435-chr7:102985734..102988691,4	MCF-7	breast:
7	chr7:102936427..102940589-chr7:102983649..102988902,7	K562	blood:

Variant related genes	Relation type
ENSG00000161057	Chromatin interaction
ENSG00000105819	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10046531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10234196	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10243055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10252006	1.00[AMR][1000 genomes]
rs10255884	1.00[AMR][1000 genomes]
rs10258184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10259126	1.00[AMR][1000 genomes]
rs10271644	1.00[AMR][1000 genomes]
rs10273102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10279752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10279918	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10441305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2079253	0.90[AFR][1000 genomes]
rs28399298	1.00[AMR][1000 genomes]
rs28605237	1.00[AMR][1000 genomes]
rs4480048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4612274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56703102	1.00[AMR][1000 genomes]
rs58192762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7794374	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102984400-102986800	Active TSS	Hela-S3	cervix
2	chr7:102985200-102987200	Weak transcription	Fetal Heart	heart
3	chr7:102985200-102987200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:102985200-102987200	Weak transcription	Small Intestine	intestine
5	chr7:102985200-102988000	Weak transcription	Gastric	stomach
6	chr7:102985400-102987600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:102985400-102987600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr7:102985400-102987600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr7:102985400-102987600	Weak transcription	Pancreas	Pancrea
10	chr7:102985400-102987800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr7:102985400-102987800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr7:102985400-102987800	Weak transcription	Esophagus	oesophagus
13	chr7:102985400-102987800	Weak transcription	Left Ventricle	heart
14	chr7:102985400-102988000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr7:102985400-102988000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr7:102985400-102988000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr7:102985400-102988000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:102985400-102988000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr7:102985400-102988000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:102985400-102988000	Weak transcription	Lung	lung
21	chr7:102985400-102988000	Weak transcription	Spleen	Spleen
22	chr7:102985600-102987200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr7:102985600-102987200	Weak transcription	Fetal Brain Male	brain
24	chr7:102985600-102987400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr7:102985600-102987400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr7:102985600-102987400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr7:102985600-102987400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr7:102985600-102987400	Weak transcription	Fetal Muscle Leg	muscle
29	chr7:102985600-102987400	Weak transcription	Fetal Stomach	stomach
30	chr7:102985600-102987400	Weak transcription	Fetal Thymus	thymus
31	chr7:102985600-102987400	Weak transcription	Right Ventricle	heart
32	chr7:102985600-102987400	Weak transcription	HSMM	muscle
33	chr7:102985600-102987400	Weak transcription	HSMMtube	muscle
34	chr7:102985600-102987600	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr7:102985600-102987600	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr7:102985600-102987600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr7:102985600-102987600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr7:102985600-102987600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr7:102985600-102987600	Weak transcription	Brain Germinal Matrix	brain
40	chr7:102985600-102987600	Weak transcription	Colonic Mucosa	Colon
41	chr7:102985600-102987600	Weak transcription	Placenta	Placenta
42	chr7:102985600-102987600	Weak transcription	Psoas Muscle	Psoas
43	chr7:102985600-102987600	Weak transcription	Right Atrium	heart
44	chr7:102985600-102987600	Weak transcription	Stomach Mucosa	stomach
45	chr7:102985600-102987800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr7:102985600-102987800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr7:102985600-102987800	Weak transcription	Aorta	Aorta
48	chr7:102985600-102987800	Weak transcription	Ovary	ovary
49	chr7:102985800-102986200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr7:102985800-102986800	Weak transcription	Monocytes-CD14+_RO01746	blood

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