Variant report

Variant	rs10259126
Chromosome Location	chr7:102767921-102767922
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:102767416..102772548-chr7:102787742..102792429,7	K562	blood:

Variant related genes	Relation type
ENSG00000161048	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10046531	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10234196	1.00[AMR][1000 genomes]
rs10235693	1.00[AMR][1000 genomes]
rs10241815	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10241827	1.00[AMR][1000 genomes]
rs10241926	1.00[AMR][1000 genomes]
rs10243055	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10245037	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10246237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10247278	1.00[YRI][hapmap]
rs10252006	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10253514	1.00[YRI][hapmap]
rs10255884	1.00[AMR][1000 genomes]
rs10258184	1.00[AMR][1000 genomes]
rs10260888	1.00[YRI][hapmap]
rs10271644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10273102	1.00[AMR][1000 genomes]
rs10279752	1.00[AMR][1000 genomes]
rs10279918	1.00[AMR][1000 genomes]
rs10441305	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs28399298	1.00[AMR][1000 genomes]
rs28452903	1.00[AMR][1000 genomes]
rs28482805	1.00[AMR][1000 genomes]
rs28602812	1.00[YRI][hapmap]
rs28894762	1.00[AMR][1000 genomes]
rs4480048	1.00[AMR][1000 genomes]
rs4612274	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs56703102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58192762	1.00[AMR][1000 genomes]
rs58593428	1.00[AMR][1000 genomes]
rs6944594	1.00[AMR][1000 genomes]
rs6951111	1.00[AMR][1000 genomes]
rs6953456	1.00[AMR][1000 genomes]
rs7792008	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7794374	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102716600-102768200	Weak transcription	Right Ventricle	heart
2	chr7:102716800-102768400	Weak transcription	Stomach Mucosa	stomach
3	chr7:102717600-102770200	Weak transcription	Small Intestine	intestine
4	chr7:102717800-102768000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr7:102719400-102769600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr7:102724000-102770200	Weak transcription	Psoas Muscle	Psoas
7	chr7:102725200-102770200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr7:102725800-102770000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr7:102727800-102768000	Weak transcription	Fetal Brain Male	brain
10	chr7:102730200-102769600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr7:102734200-102770600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:102736000-102768000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr7:102738400-102768400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:102738400-102773600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:102741400-102770600	Weak transcription	HUVEC	blood vessel
16	chr7:102743600-102770200	Weak transcription	Colon Smooth Muscle	Colon
17	chr7:102747200-102768200	Weak transcription	Fetal Heart	heart
18	chr7:102747400-102781800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr7:102747600-102768000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr7:102747600-102768000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr7:102747600-102775200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr7:102747600-102789200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr7:102754000-102770400	Weak transcription	NHLF	lung
24	chr7:102754200-102773600	Weak transcription	HSMMtube	muscle
25	chr7:102754400-102771800	Weak transcription	NHEK	skin
26	chr7:102755200-102770000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr7:102755200-102772000	Weak transcription	HMEC	breast
28	chr7:102755400-102768400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr7:102755600-102768200	Weak transcription	Osteobl	bone
30	chr7:102755600-102775400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr7:102757200-102769200	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr7:102757400-102769000	Strong transcription	Dnd41	blood
33	chr7:102757600-102769200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr7:102758600-102769800	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr7:102758800-102769200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr7:102759200-102769200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr7:102759200-102769200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr7:102759400-102769200	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr7:102759800-102769200	Strong transcription	Fetal Muscle Trunk	muscle
40	chr7:102760200-102769200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr7:102760200-102770200	Weak transcription	Aorta	Aorta
42	chr7:102760600-102768000	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr7:102760600-102769600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr7:102760600-102771800	Weak transcription	Esophagus	oesophagus
45	chr7:102760600-102782000	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr7:102760600-102782200	Weak transcription	HSMM	muscle
47	chr7:102760800-102768000	Weak transcription	Rectal Smooth Muscle	rectum
48	chr7:102760800-102768400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr7:102760800-102769200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr7:102760800-102770200	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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