Variant report

Variant	rs10260888
Chromosome Location	chr7:102588323-102588324
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:102586835..102589764-chr7:102713384..102716042,2	K562	blood:
2	chr7:102586889..102588859-chr7:102610741..102612720,2	K562	blood:
3	chr7:102583269..102585217-chr7:102586196..102590052,3	K562	blood:

Variant related genes	Relation type
ENSG00000161040	Chromatin interaction
ENSG00000170632	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10156027	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10225811	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10232029	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10239891	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10241815	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs10241827	0.95[AFR][1000 genomes]
rs10241926	0.95[AFR][1000 genomes]
rs10242506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10245037	1.00[YRI][hapmap]
rs10248082	1.00[AMR][1000 genomes]
rs10252006	1.00[YRI][hapmap]
rs10253514	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs10254234	1.00[AMR][1000 genomes]
rs10255596	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10259126	1.00[YRI][hapmap]
rs10261565	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10277828	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10281578	1.00[AMR][1000 genomes]
rs10282582	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28444303	1.00[AMR][1000 genomes]
rs28452903	0.95[AFR][1000 genomes]
rs28482805	0.84[AFR][1000 genomes]
rs28722504	1.00[AMR][1000 genomes]
rs28894762	0.95[AFR][1000 genomes]
rs58593428	0.95[AFR][1000 genomes]
rs58612464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6949710	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6951111	0.95[AFR][1000 genomes]
rs6953456	0.95[AFR][1000 genomes]
rs6970026	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7792008	1.00[YRI][hapmap];0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv464667	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv608060	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102573800-102591400	Weak transcription	Pancreas	Pancrea
2	chr7:102574000-102592200	Weak transcription	Fetal Intestine Large	intestine
3	chr7:102574600-102594400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:102579600-102588600	Strong transcription	HSMM	muscle
5	chr7:102582800-102590800	Weak transcription	Fetal Stomach	stomach
6	chr7:102585400-102588600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:102586600-102588600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr7:102587000-102589400	Weak transcription	NH-A	brain
9	chr7:102587000-102590400	Weak transcription	Fetal Lung	lung
10	chr7:102587000-102590800	Weak transcription	HSMMtube	muscle
11	chr7:102587400-102588400	Enhancers	Fetal Kidney	kidney
12	chr7:102588000-102590200	Weak transcription	K562	blood
13	chr7:102588200-102588400	Enhancers	HUVEC	blood vessel

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