Variant report

Variant	rs10156027
Chromosome Location	chr7:102558163-102558164
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:102556325..102558865-chr7:102559053..102562636,3	K562	blood:
2	chr7:102556611..102558865-chr7:102559053..102561670,2	K562	blood:
3	chr7:102552431..102554156-chr7:102558067..102560238,3	K562	blood:

Variant related genes	Relation type
ENSG00000128606	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10225811	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10232029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10239891	1.00[AMR][1000 genomes]
rs10241815	0.89[AFR][1000 genomes]
rs10241827	0.89[AFR][1000 genomes]
rs10241926	0.89[AFR][1000 genomes]
rs10242506	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10248082	1.00[AMR][1000 genomes]
rs10253514	0.80[AFR][1000 genomes]
rs10254234	1.00[AMR][1000 genomes]
rs10255596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10260888	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10261565	1.00[AMR][1000 genomes]
rs10277828	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10281578	1.00[AMR][1000 genomes]
rs10282582	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28444303	1.00[AMR][1000 genomes]
rs28452903	0.89[AFR][1000 genomes]
rs28722504	1.00[AMR][1000 genomes]
rs28894762	0.89[AFR][1000 genomes]
rs58593428	0.89[AFR][1000 genomes]
rs58612464	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6949710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6951111	0.89[AFR][1000 genomes]
rs6953456	0.89[AFR][1000 genomes]
rs6970026	1.00[AMR][1000 genomes]
rs7792008	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv608058	chr7:102466741-102571713	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv464667	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv608060	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102517200-102578200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:102553600-102559000	Weak transcription	Psoas Muscle	Psoas
3	chr7:102554800-102566200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:102555200-102559000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:102555600-102559000	Weak transcription	Fetal Muscle Leg	muscle
6	chr7:102555600-102566400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:102555600-102566600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:102555800-102559600	Enhancers	Fetal Stomach	stomach
9	chr7:102556800-102558200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr7:102556800-102558200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:102556800-102558200	Enhancers	Placenta Amnion	Placenta Amnion
12	chr7:102556800-102558200	Enhancers	NHLF	lung
13	chr7:102556800-102558400	Enhancers	Aorta	Aorta
14	chr7:102556800-102558400	Enhancers	Osteobl	bone
15	chr7:102556800-102558600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:102556800-102559200	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr7:102556800-102559200	Enhancers	NHDF-Ad	bronchial
18	chr7:102556800-102559400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr7:102556800-102559600	Strong transcription	K562	blood
20	chr7:102556800-102559800	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr7:102556800-102559800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr7:102557000-102558200	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr7:102557000-102558400	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr7:102557000-102558600	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr7:102557200-102558200	Weak transcription	A549	lung
26	chr7:102557400-102558200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr7:102557400-102558400	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr7:102557400-102559200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr7:102557600-102558200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr7:102557600-102558200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
31	chr7:102557600-102558400	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr7:102557600-102558400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr7:102557600-102558400	Flanking Active TSS	Fetal Lung	lung
34	chr7:102557600-102558600	Enhancers	Fetal Heart	heart
35	chr7:102557800-102558200	Enhancers	Fetal Brain Male	brain
36	chr7:102557800-102558200	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr7:102557800-102558200	Flanking Active TSS	HSMMtube	muscle
38	chr7:102557800-102558400	Enhancers	H9 Cell Line	embryonic stem cell
39	chr7:102557800-102558400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr7:102557800-102558400	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr7:102557800-102558400	Transcr. at gene 5' and 3'	HSMM	muscle
42	chr7:102557800-102559000	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr7:102558000-102558400	Flanking Active TSS	Ovary	ovary
44	chr7:102558000-102558400	Enhancers	Pancreas	Pancrea
45	chr7:102558000-102558400	Enhancers	Right Atrium	heart
46	chr7:102558000-102559800	Genic enhancers	NH-A	brain
47	chr7:102558000-102566400	Weak transcription	HUVEC	blood vessel
48	chr7:102558000-102567200	Weak transcription	Fetal Kidney	kidney

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